Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2288 ATGGAGTTTCACTCTCTTCCCAAATTCTaccttcttcttttcttatccATTCTCTTCCTTTCATCCTTTCACGTTCAAGCTAAAGTTAAATTCAATTACTGCGATAAGAAGACACCCTATCCTGTGAAAGTATCTGGAATTGAAATATCACCAGACCCTGTGGTGAGTGGCGACCCGGCTACCTTCAAGATCTTAGCTACTTCTgGTCAAACTATTTATGGTGGAGAGGTGGTAATTGGAGTTTCATACCTTGGGGTGCCTGTCCATACGGAAAGAATTGATCTTTGTAAAGAAGTATCTTGTCCTGTTTATGACGGCAATTTTCTGATTTCTCACACTCAAACATTGCCAGCATTTACTCCACCGGGACTATACTCTCTGAAGATGACACTGAAGAATAGCGAGGATGAGGTTTTAACTTgcattaagtttaattttaaaatcggTCGTGGATCTTTTGTGTCTGATATGTGA 474 0.3692 MEFHSLPKFYLLLFLSILFLSSFHVQAKVKFNYCDKKTPYPVKVSGIEISPDPVVSGDPATFKILATSGQTIYGGEVVIGVSYLGVPVHTERIDLCKEVSCPVYDGNFLISHTQTLPAFTPPGLYSLKMTLKNSEDEVLTCIKFNFKIGRGSFVSDM 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2288 157 Gene3D - 27 150 - -
Ssu3g2288 157 SUPERFAMILY E set domains 28 148 IPR014756 -
Ssu3g2288 157 SMART pgtp_13 31 146 IPR003172 -
Ssu3g2288 157 CDD PG-PI_TP 31 146 IPR033917 GO:0032366
Ssu3g2288 157 PANTHER NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED 5 155 IPR039670 -
Ssu3g2288 157 Pfam ML domain 29 148 IPR003172 -
Ssu3g2288 157 PANTHER LEGUMINOSIN GROUP578 SECRETED PEPTIDE 5 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2288 Ssu-Chr3 73130780 73135870 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2288 - - gmx:100500058 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2288 3 73130780 73135870 Ssu3g2288 3 73130780 73135870 ECH
Ssu8g0750 8 12251163 12253592 Ssu3g2288 3 73130780 73135870 PCT