Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2274 ATGGCGGAAACCCTAAGCCCCAATCCCGCGACGGCTCAGAAGCAGAGGGTCCGCATCCAGTCCCCGACCAGCCCCTTCTTCTTGGGCTCCAACGACGACCAGCTCGAGCGAGCCCAGGCACGCGCCGCACGCGCCGCCGCCATCCGCCGCAGGAGCCTCGCCCTCAACCAACCCCTTCAGGCCATTTCCGATCCAGGCCTCAACAAACAGCAGATCCTCGTTTTGTTCCAAAACTGCATCAAACTCGCCAGCGAAAACAAAATTAATCAGAAAAACACGTGGGAGTTGAACCTGATTGACCACCTTACCGATATCATCAAGGTCGAAGAAGAAAATGACGCGGAGACTAATTTTCAAAAGGCAAGCTGCACTCTTGAGGCTGGAgtcaaaatttattcattaaggGTGGATTCAGCGCATTCTGCAGCATATAAAGTTCTTGGTGGGATGAATAGAGCAGGCCAAGAAGCTGAGCAAGACACTAACCTGGAGGGTAATATTGAAAGTGGACAAGAAGAAGGCAGGAAAGAAACGAACAAAAAGTTGTCACCTTTGTCAACATTGGAATCATCTTTCGAGGCACTTAATGTAAAGAAGTTTGATGCTGCATTTGTCGTGGATCCTCTCTATCGCCAGACAACAGCAAAATTTGATGAAGGTGGTGCCAAGGGTCTTTTAATGAATAATCTCGGTGTATATGGTGGATGTAGGGTGCTCTTTGATTCACTAGAAGTGCCTGCGAAGTGTATGGCAAGCCAAAATCAATCTGATATTTCAGCTACTATTGATCTTTCTTTTGTCAGAGATTGTATCGAGCAGAAGCTGTCGGTCATGCGTGTGAAGAATGAAATTTCTCCAACTCTCAGGACTATAGTAAAccaatttgatgaaaataacAGAAGGCCCACTAATTTTCAACTTCATGATCAGAATTTAGCTGAAGATCTTGACGCTgcttttaataatgaaaatggttTTGATCATGATGATCATGATGAGAACTGCACTGCCTGGGGTGAAGGTCATGATGACCAAACAGTTGTTGCCGATCTAGGCTGTAATGATGCAGATCCAAGTTTTCCCAGTTACCCTcagGACAATGAGCCATTTCCTTCCCCAGACGCTGATATGGATGACAGAATTGAAAAGGTTGAcgagtatttatttttgagtttgggtttttcttcaaaacaaaatgcatgGGCAGGCCCTGATCATTGGAAGTATCGAAAATCCAAAGTCTCAGAGGTTCATCCTACTTCTGAAGATGGGTCGACCCTAAAACCTAGGCAGTCAAAGAGCAAGAAACAGGCTGAAGTTGATTTAAATTTCACAAATTCTCTTGAGAAAGAAACGCTAGATATATTTTCTCTTCCCAAGAATCCCAAATTGTTACTGCTCCCTGAAAGCAGATTGCCGTGCAATACAAAACTTCCTGAGGACTGCCACTATCAGCCAGAGGATCTTGTCAAGTTATTTCTTCTGTCTAATGTGAAGTGTCTCGGGAGGAGGGCAAACAGGTTCTCAGATGGATCTAGAGAACAATACAATGAATATGAATCATTCCCTTCGTGGGATAATGGAAGTGTTTGTGGGGATGACTCTGGTGACTACGAAGGTGATCTTCATAGTGACATGGAGGACTCCAACACTCTTATTACTCAGCCTCGTCAGGTCAATAAAATTGAAGTCCAGTATGACAAGACTTCCAAACAAGTTGATGTTCAGGCACTAAAAGTTACTCTTTGGGACCATGTTCAAGAATCTGTTAAACTTCCTTTACAGGGTCAAGAAGATACCGTATCTTTCAGGAATATATTGGCCAACTTTCCTAACGAATGCAATGCTGCTGCAACCATTAGTGACATCTCTCCTCATCTGTGCTTCATATGTCTACTGCATTTGGCAAACGAGAAAGGATTGAGCATTCAAAGCTGCCCCAACTTGGATGATCTTGCCATACGCCTTCCACATGTTGCTGACTCTATGAGGGGAACAGTTTAG 2004 0.4261 MAETLSPNPATAQKQRVRIQSPTSPFFLGSNDDQLERAQARAARAAAIRRRSLALNQPLQAISDPGLNKQQILVLFQNCIKLASENKINQKNTWELNLIDHLTDIIKVEEENDAETNFQKASCTLEAGVKIYSLRVDSAHSAAYKVLGGMNRAGQEAEQDTNLEGNIESGQEEGRKETNKKLSPLSTLESSFEALNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGGCRVLFDSLEVPAKCMASQNQSDISATIDLSFVRDCIEQKLSVMRVKNEISPTLRTIVNQFDENNRRPTNFQLHDQNLAEDLDAAFNNENGFDHDDHDENCTAWGEGHDDQTVVADLGCNDADPSFPSYPQDNEPFPSPDADMDDRIEKVDEYLFLSLGFSSKQNAWAGPDHWKYRKSKVSEVHPTSEDGSTLKPRQSKSKKQAEVDLNFTNSLEKETLDIFSLPKNPKLLLLPESRLPCNTKLPEDCHYQPEDLVKLFLLSNVKCLGRRANRFSDGSREQYNEYESFPSWDNGSVCGDDSGDYEGDLHSDMEDSNTLITQPRQVNKIEVQYDKTSKQVDVQALKVTLWDHVQESVKLPLQGQEDTVSFRNILANFPNECNAAATISDISPHLCFICLLHLANEKGLSIQSCPNLDDLAIRLPHVADSMRGTV 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2274 667 PANTHER CONDENSIN COMPLEX SUBUNIT 2 1 660 - -
Ssu3g2274 667 MobiDBLite consensus disorder prediction 413 438 - -
Ssu3g2274 667 PIRSF Condensin_H 540 658 IPR022816 GO:0000796|GO:0007076
Ssu3g2274 667 PIRSF Condensin_H 1 542 IPR022816 GO:0000796|GO:0007076
Ssu3g2274 667 MobiDBLite consensus disorder prediction 155 183 - -
Ssu3g2274 667 Pfam Condensin complex subunit 2 24 545 IPR022816 GO:0000796|GO:0007076
Ssu3g2274 667 Pfam Condensin complex subunit 2 544 655 IPR022816 GO:0000796|GO:0007076
Ssu3g2274 667 PANTHER CONDENSIN COMPLEX SUBUNIT 2 1 660 IPR022816 GO:0000796|GO:0007076
Ssu3g2274 667 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2274 Ssu-Chr3 72889058 72893721 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2274 K06676 - gmx:100799781 1135.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2274 3 72889058 72893721 Ssu3g2274 3 72889058 72893721 ECH
Ssu8g0759 8 12404826 12408448 Ssu3g2274 3 72889058 72893721 PCT