Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2272 ATGAAGGATATGTATGATGACCTTAGCCGCAAAATAGAATTGGATGCGTCCCAAAGAACAAATCCATGTCATGGAGAATTTGCGGCTTTCTCAAACACTGAGAGGACAAATCATCCAACCATAATCCAGGTTGTATGGGAGAACACGGAACGCCTTGCAAATGGGTTGCCGCATTTGATCTACATAGCTAGAGAGAAGAGGCCAAAACAGTCTCATCATTTCAAAGCAGGTGCCATGAATGTGTTGACAAGAGTCTCCGGATTGATAACCAACGCTCCCTTCATGTTGAACGTGGACTGTGACATGATTGTAAACAATCCAAAAGTTGTTCTACATGCGTTATGCATTTTGCTTGATCccaaaggagaaaaagaagttgCATTTGTTCAATTTCCCCAACAATTCCATGCTACATTGAAGGACGATCCTTTTGGAAACCAGATGGCAATTTTGATTAAGTACCTGGCGGCTGGATTAGCTGGACTCCAAGGACCATTCTACGGGGGAACAAACTGCGTACATAGAAGAAAAGTTATTTATGGTCTTTCTCCAGACAACGTGGAAAAGGGtacttgttatatatttatCACATCAGAGgaggaattaaaacaaaaattcggAGCTTCAAAGGAGATTATGAAATCAGCTGCTTATGCTTTGGAAGGGAGGACATATTCGTCAAATGATATTAACATTTCGAACGTTGTTGACGTAGCAAGCCAAATTGCTGGTTATGGATATGAATATGGCACTGGATGGGGCAAACAGGTAGGTTGGATATATGGATCAGTAACAGAGGACGTGCTCACGGGGCTGACAATACATGAAGAAGGTTGGAGATCAGAACTGTGTACACCAAACCCAATTGCCTTCACAGGTTTCGCTCCAGGAGGTGGCCCAACTGCCATGGCCCAACAAAAGAGGTGGGCCACAGGATTGCTTGAGATCTTCTTTTGCAAGCACTGTCCTATTATTGTCACTCTTTTTCGTAACCTTACTTTAAGGCAGTGCTTAGCATATATGTGGATTATCAATTGGGGCCTGCGACCAGTCTTTGAAGTATGCTATGCCTGTCTCCTTACATATTGCATCATTACCAACTCCAATTTCTTGCCGTTGGTAAGtGACCTAGGCATATGTATTCCCGttgcatttttcataatttacaagGTATATACTGCATCAGAATATTTGGTAGAAGGGTTATCAATTCGAGCATGGTGGAACAATCAAAGGATGTCAAGAATAACTCCAATGAATGCTGGTTTTTGTGCATTTCTTATCGTCCTacttaaattattaagaatatcCGAAACTGTGTTTGACATAACAAAGAAAGATTTACCCCCAGCAGGGGATGTTGGAGATGATAAGGATGCTGGCAGGTACACTTTTGATGAGTCACTAGTTTTCTTGCCAGGCACTACTATTTTGTTGTTGCAATTGACAGCAATGGTTATCAAGTTATTAGGGTTGCAACCACCAGTACCAAGTCAAAGTGATAATGGGTGTGGACTAGAAGGACTGTTGTTGGTTGATGAGGCTTAG 1548 0.3999 MKDMYDDLSRKIELDASQRTNPCHGEFAAFSNTERTNHPTIIQVVWENTERLANGLPHLIYIAREKRPKQSHHFKAGAMNVLTRVSGLITNAPFMLNVDCDMIVNNPKVVLHALCILLDPKGEKEVAFVQFPQQFHATLKDDPFGNQMAILIKYLAAGLAGLQGPFYGGTNCVHRRKVIYGLSPDNVEKGTCYIFITSEEELKQKFGASKEIMKSAAYALEGRTYSSNDINISNVVDVASQIAGYGYEYGTGWGKQVGWIYGSVTEDVLTGLTIHEEGWRSELCTPNPIAFTGFAPGGGPTAMAQQKRWATGLLEIFFCKHCPIIVTLFRNLTLRQCLAYMWIINWGLRPVFEVCYACLLTYCIITNSNFLPLVSDLGICIPVAFFIIYKVYTASEYLVEGLSIRAWWNNQRMSRITPMNAGFCAFLIVLLKLLRISETVFDITKKDLPPAGDVGDDKDAGRYTFDESLVFLPGTTILLLQLTAMVIKLLGLQPPVPSQSDNGCGLEGLLLVDEA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2272 515 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 29 186 IPR029044 -
Ssu3g2272 515 SUPERFAMILY Nucleotide-diphospho-sugar transferases 50 338 IPR029044 -
Ssu3g2272 515 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 2 510 - -
Ssu3g2272 515 Pfam Cellulose synthase 33 190 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu3g2272 515 Pfam Cellulose synthase 196 488 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu3g2272 515 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2272 Ssu-Chr3 72836616 72843973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2272 2 506 Glycosyltransferase AT2G32540 43.156 1.18e-133 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2272 - - gmx:100500469 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2272 3 72836616 72843973 Ssu3g2272 3 72836616 72843973 ECH
Ssu8g0763 8 12463660 12484224 Ssu3g2272 3 72836616 72843973 PCT