Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2271 ATGGCCAACCAAAACTCTCTCCCCCTCTATGAAAAATACTGGTACAAGCACAATTATAAAAGGGTAACTGAGAGCTTGCTTTTAATCCTCCTCTTATTGCTGCTTGGTTACCGCGTTATCTCTGTCGACAACTACTCTTTCCCTTGGTTTGTTGCATTTTTGTGCGAATCCTGGTACACCATCTCTTGGATTTTCACCCTCACCACTCAATGGAATCCAGCAGTAATCAGAACCTACCCAGATCGTCTCTTGCAAAGTGTGCAAGAGCTTCCACCGGTGGATTTGTTTGTGACAACAGCAGACCCTGTGCTTGAACCATCCATTATCACAGTGAACACTGTGTTGTCTTTGTTGGCACTTGATTACCCAGCTCACAAGCTAGCTTGTTATGTTTCTGATGACGGCAGTTCCCCTCTTACTTTCTATGCTCTTCAAGAAGCCTCTGAATTTGCTAAGTTTTGGGTACCTTTCTGTAAGAAGTACGAGGTGCAAGTTAGAGCTCCACTCAGATACTTCTCTGACATGCCCGAGGTCTCCACAGCCAACAACACTCCAGAATTTAGACAAGAATGGTTACACATGAAAGATATGTGTGATCATCTTAGCAACAAAATAGAACTAGATGTGTTCCGAAAATCAAATCCATGTAATAATGGAGACTTTGCGGTTTTCTCAAACACTAAGAAGACAAATTATCCAACTATAATCCAGGTTATATGGGAGAACAAGGCATGCGTTGCAGGTGGATTGCCACATTTGATTTACATATCTAGAGAGAAGAGGCCGAAACAGTCACACCATTTCAAAGCTGGTGCTATGAACGTGCTGACAAGAGTCTCTGGGTTGATAACCAACGCTCCATTTATGTTGAATGTGGATTGTGACATGATTGTAAACAATCCAAAGATTGTTCTCCATGCGTTGTGCATTTTGCTTGATTccaaaggagaaaaagaagttgCATTTGCCCAATTTCCCCAACAATTCTATGCTACATTGAAGGACGATCCTTTTGGAAATCAGATGGCAATTTTTATTAAGTACTTGACTGCTGGAATAGCTGGACTGCAAGGACCTTTCTACGGTGGAACAAACTGCTTACATATAAGAAAAGTTATTTATGGTCTTTCTCCGGATAACATAGAAAAGGGAAACAGCGTATCAGAGgaggaattaaaacaaaaattgggaGCTTCAAAGGAGGTTATGAAAGCAGCTGCTCATGCTTTGGAAGGGCGGACATATTCGCTTGATGATATTAATATTTCGAACGCTGTTGACGTAGCAAGTCAAGTTGCTAGTTGTGGATATGAATATGGCACTAGCTGGGGCAAACAGGTGGGCTGGATATATGGATCACTAACAGAGGATAAACTCCTTGGGCTGACCATACATGAAAAAGGTTGGAGATCAGAATTGTGTACACCAAACCCAATTGCCTTCACAGGTTTTGCCCCAAGAGGTGGCCCAACTTCAATGGCCCAACAAAAGAGATGGGCCACAGGATTGCTTGAGATCTTCTTTAGCAAGCACTGTCCCATTATCGGCACCCTTTTTCGTAAACTTACTTTGAGACAATGCTTAGCGTATATGTGGATTATCAACTGGGGCCTAAACCCAGTCTTTGAAGTATGTTATGCATGTCTCCTCGCATATTGTATCGTCACCAACTCCAATTTCTTACCCTTGGACCCGGGCATATGTATTCTCattacatttttcataatttacaagGCATATACTATATCAGAATATTTGACGGCAGGGCTATCAATTCGAGCATGGTGGAACAATCAAAGGATGTCAAGAATAACTTTAATGAATGTTGGTTTTTGTGCATTTCTTGGCGTCCTACTTAAATTGTTAAGAATATCTGAAACTGTGTTTGACATTACAAAGAAAGATTTACCCCCAACAAGGGATGTTGAAGATGATAAGGATGCAGGCAGGTACACCTTCGATGAGTCCCTAGTTTTCTTGCCAGGCACTACCATTTTGTTGTTACAATTGATAACAATGGTTATCCAGTTATTCGGGTTGCAACCACCAGTGCCAACTCAGAGTGGGAATGAGCGTGGAGTAGGTGAGATTTTATGTAgtgtttatttgattatttgctATTGGCCCTTTTTGAGAGGATTCTTTGAGACAGGAAAGTATAGAATTCCCTTGTCCACAATATGCAAATCAACTATCTTAACATGTCTCTTTGTACACATACGTAGAAGGACCGTTGCTGGTTGA 2244 0.402 MANQNSLPLYEKYWYKHNYKRVTESLLLILLLLLLGYRVISVDNYSFPWFVAFLCESWYTISWIFTLTTQWNPAVIRTYPDRLLQSVQELPPVDLFVTTADPVLEPSIITVNTVLSLLALDYPAHKLACYVSDDGSSPLTFYALQEASEFAKFWVPFCKKYEVQVRAPLRYFSDMPEVSTANNTPEFRQEWLHMKDMCDHLSNKIELDVFRKSNPCNNGDFAVFSNTKKTNYPTIIQVIWENKACVAGGLPHLIYISREKRPKQSHHFKAGAMNVLTRVSGLITNAPFMLNVDCDMIVNNPKIVLHALCILLDSKGEKEVAFAQFPQQFYATLKDDPFGNQMAIFIKYLTAGIAGLQGPFYGGTNCLHIRKVIYGLSPDNIEKGNSVSEEELKQKLGASKEVMKAAAHALEGRTYSLDDINISNAVDVASQVASCGYEYGTSWGKQVGWIYGSLTEDKLLGLTIHEKGWRSELCTPNPIAFTGFAPRGGPTSMAQQKRWATGLLEIFFSKHCPIIGTLFRKLTLRQCLAYMWIINWGLNPVFEVCYACLLAYCIVTNSNFLPLDPGICILITFFIIYKAYTISEYLTAGLSIRAWWNNQRMSRITLMNVGFCAFLGVLLKLLRISETVFDITKKDLPPTRDVEDDKDAGRYTFDESLVFLPGTTILLLQLITMVIQLFGLQPPVPTQSGNERGVGEILCSVYLIICYWPFLRGFFETGKYRIPLSTICKSTILTCLFVHIRRRTVAG 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2271 747 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 2 747 - -
Ssu3g2271 747 SUPERFAMILY Nucleotide-diphospho-sugar transferases 110 522 IPR029044 -
Ssu3g2271 747 Pfam Cellulose synthase 93 385 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu3g2271 747 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 747 - -
Ssu3g2271 747 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 379 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2271 Ssu-Chr3 72811413 72821645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2271 8 738 Glycosyltransferase AT2G32540 45.960 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2271 - - gmx:100500469 1275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0764 8 12519621 12523743 Ssu3g2271 3 72811413 72821645 PCT