Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2257 ATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTGAGAGGAGACAGGCTGAAGCAGCTCGCATAAGAGAGAAGTATCCTGATAGAATTCCAGTAATTGTTGAAAGAGCAGAGAAGAGTGATGTTCCTGAAATTGATAAGAAAAAGTATCTTGTTCCTGCTGATTTGACTGTTGGCCAGTTTGTGTATGTGGTGCGGAAGAGAATCAAGCTGAGTCCCGAGAAGGCCATCTTCATTTTTGTTAAGAACATTTTACCACCAactgCGGCAATGATGTCTGCAATTTACGAGGAAAACAAGGATGAAGATGGATTCTTATATATGACTTACAGTGGAGAGAACACATTTGGGATTGTGTTCTGA 363 0.4077 MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGIVF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2257 120 Gene3D - 1 118 - -
Ssu3g2257 120 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Ssu3g2257 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Ssu3g2257 120 CDD Ubl_ATG8 12 114 - -
Ssu3g2257 120 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Ssu3g2257 120 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2257 Ssu-Chr3 72546527 72548239 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2257 K08341 - gmx:100301895 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2257 3 72546527 72548239 Ssu3g2257 3 72546527 72548239 ECH
Ssu3g2257 3 72546527 72548239 Ssu1g0892 1 19776944 19778707 ECH