Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0892 ATGGCCAAGACCTCCTTCAAGCTTCAACATCCTTTGGAAAGAAGGCAGGCTGAAGCTGCTCGCATTAGAGAGAAATATCCCGATAGAATACCTGTGATCGTGGAGAAAGCAGAAAGAAGTGACATTCCAGACATTGATAAGAAGAAATACCTTGTCCCTGCTGATTTGACTGTTGGCCAGTTTGTTTATGTTGTCCGCAAAAGAATCAAGCTCAGTGCAGAGAAggctatttttgttttcatcaatAACACTCTACCTCCAACTGCCGCATTGATGTCTGCTATTTATGAGGAAAATAAGGATCAAGATGGCTTTCTTTACATGACTTACAGTGGAGAGAACACCTTCGGATCCCACTAG 360 0.4083 MAKTSFKLQHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFINNTLPPTAALMSAIYEENKDQDGFLYMTYSGENTFGSH 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0892 119 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Ssu1g0892 119 CDD Ubl_ATG8 12 114 - -
Ssu1g0892 119 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Ssu1g0892 119 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Ssu1g0892 119 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Ssu1g0892 119 Gene3D - 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0892 Ssu-Chr1 19776944 19778707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0892 K08341 - gmx:100527884 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0892 1 19776944 19778707 Ssu1g0892 1 19776944 19778707 ECH
Ssu3g2257 3 72546527 72548239 Ssu1g0892 1 19776944 19778707 ECH