Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2227 ATGCCTCCTCTTCCACTCAGAACCCGAACACCCTCCTTCAAAACCTTCCTCTTAACCCTCTCCCTCCTCCTCAACCTCTACCTCCTCTTCCTCCTGTGGGCCCCATCCTCGGCAACATTACCGCCATCCGCCCTCATCTCCCGCCTCTCCCCCACCACGCGCCGCCACGTCCTCTTCGCCGTCGCCTCCTCCTCCCTCTCCTGGCCCCGCCGCCTCCCCTACCTCCGCCTCTGGTACTCCCCCGCCTCCACCCGCGCCCTCGCATTCCTCGACAAACCGCCGCCGCCCaactcctcctcctcctcctcctcgcCGCCGGTGGTGGTCTCCGGCGACACGTCCGCGTTCCCGTACACGTTCCGCGGGGGGCTGCGGTCCGCGATCCGCGTGGCGCGCGTGGTGAAGGAGGCGGTGGACCGCAACGAGACGGACGTGCGGTGGTTCGTGTTCGGCGACGACGACACCGTGTTCTTCGTCGACAACGTGGTGCGCACGCTCGCGGGGTACGACCACCGCCGGTGGTTCTACGTCGGGAGCAACTCCGAGAGCTACGAGCAGAACGTGAAGAACTCGTTCAAGATGGCGTTCGGCGGCGGAGGGTTCGCGATCAGTTGCTCGCTCGCTAGGGTTTTGGCGAGGGTTTTGGACTCGTGCTTGAGGAGGTACGGCCACTTGTATGGCAGCGATTCCAGAATTTATTCTTGCGTCGCGGAACTTGGCGTTGGGTTAACGCATGAACCTGGCTTTCATCAGATGAAAGCAATTATGAAACATGAAAATGATGATTTGCATTGTGTTGTACTTTGCTGGAATGCTAGTTAG 822 0.5961 MPPLPLRTRTPSFKTFLLTLSLLLNLYLLFLLWAPSSATLPPSALISRLSPTTRRHVLFAVASSSLSWPRRLPYLRLWYSPASTRALAFLDKPPPPNSSSSSSSPPVVVSGDTSAFPYTFRGGLRSAIRVARVVKEAVDRNETDVRWFVFGDDDTVFFVDNVVRTLAGYDHRRWFYVGSNSESYEQNVKNSFKMAFGGGGFAISCSLARVLARVLDSCLRRYGHLYGSDSRIYSCVAELGVGLTHEPGFHQMKAIMKHENDDLHCVVLCWNAS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2227 273 Pfam Protein of unknown function, DUF604 186 252 IPR006740 -
Ssu3g2227 273 PANTHER GLYCOSYLTRANSFERASE 10 252 - -
Ssu3g2227 273 Gene3D - 47 270 - -
Ssu3g2227 273 PANTHER FRINGE-RELATED 10 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2227 Ssu-Chr3 72017349 72019688 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2227 52 252 Glycosyltransferase AT4G15240 72.139 6.71e-100 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2227 - - pvu:PHAVU_011G106400g 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2227 3 72017349 72019688 Ssu3g2227 3 72017349 72019688 ECH
Ssu3g2227 3 72017349 72019688 Ssu8g0806 8 13273944 13275472 PCT