Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2222 ATGACCGTTGTAAAACCCATGTTGCTTTATTCCTCCTTCATATCACATGTTAGTTTTGGCAAACCTCAGAAACCAGAAGGCCCTAATCTTCTCCTGCGTAGAATTATTTTCCCTCTCCGATGCAACGCAACCACAAACGTTTCTGAAAGAAAATCAGCCAATTACCAGCCAAACCTCTGGAATTACGATTTTCTGCAGTCCTTGAAGCATGACTATGCGGATATGAGATATAAGGAAAGGGCCAGGAAGCTGCAAGAGGAAGTAAGGAGAATGATTAAGGATGAAAATACAGACACATGGGTCAAACTAGACCTGATTGACGATGTGAAACGCTTGGGCCTCGGTTACCACTTTGAGAAAGAGATAGGAGAGGCCCTTCATAGGTGTCTCTCTTCTGAAAGATTTAGTGGTACAATCACTCGCAAAAGGCTGCATGAAACTGCTTTAAGCTTCAGGCTCCTGAGAGAATATGGCCATGATGTCACCGCAGATATATTTGAGAGGTTTAAGGACCACAACGGTAATTTCAAGGCAAGCCTTAGCAGAGATGTGAAGGGAATGTTGAGTCTGTACGAGGCATCGTTTCTCGGTTACGAAGGAGAACCGATTCTGGATGAGGCCAAGGCCTTCACTAGCCTCCATCTTAGGGGTGGTGCCCTCGATAAAGGTGGAAGCAAGAGTATCCTCTTAGAACAAGTGAATCACGCGTTGGAGCTTCCGCTGCATCGCAGAATCCAAAGGCTTGAAGCCCGATGGTATATTGAATCTTATGCTAACAGAAGGGACGCTAACCGGGTGCTGCTTGAAGCAGCAAAACTGGACTTCAACATTGTGCAGTCAACACTGCAAAGCGATCTCCACGAAATGTCAAGGTGGTGGAAAGGGATGGGTCTAGCCTCAAAGTTAAGCTTCAGCCGAGATAGGTTAATGGAATGCTTCTTTTGGACGGTTGGAATGGTCTACGAGCCTCAATTTAGTGATCTCCGCAAAGGTTTAACGAAAGTGGCATCCTTAATAACTACAATCGATGACGTGTATGATGTGTATGGCACCTTGGATGAATTGGAACTTTTCACAACAGCTGTTGAAAGTTGGGATGTTAAAGCAGTTCAAGTTCTGCCGGATTACATGAAGATATGCTTTCTAGCACTCTACAACACTGTCAACGAATTTGCTTATGATGCACTTAAAGAACAAGGACGAGACATCCTTCCCTACCTCACCAAAGCATGGTCTGATATGTTGAAAGCATTCCTACAAGAAGCCAAGTGGTGCCGGGACAAACACGTGCCAAAATTTGGCGATTACCTCAATAATGCATGGGTGTCAGTCTCGGGTGTAGTTATACTGACCCATGCCTATTTCTTGCTAAATCATAGCATAACAAAGGAAGCACTTGAGTCCTTGGACAATTACCACGCCCTATTGCAGAGACCATCCACTATTTTTCGACTTTGCAATGATTTGGGTACTTCAAAGGCAGAGTTAGAGAGAGGTGAAGCAGCAAGCTCAATTGTGTGTTACATGCGAGAAAGTGGTGCCAGTGAAGAGGGTGCTCACAAACACATCCACAATTTGCTTAATGAAACGtggaagaaaatgaacaaaGATCGAGTCACACATTCTCCTTTCCCAAAACCTTTCATAGAAACAGCTATCAACCTTGCAAGAATTTCTCAATGCACATACCAGCACGGAGATGCGCATGGAGCCCCAGATAGCACGGCCAAGAATCGCATACGATCCTTGATAATTGAACCCATTGCCCTAGACATGGGCATCTGA 1785 0.4443 MTVVKPMLLYSSFISHVSFGKPQKPEGPNLLLRRIIFPLRCNATTNVSERKSANYQPNLWNYDFLQSLKHDYADMRYKERARKLQEEVRRMIKDENTDTWVKLDLIDDVKRLGLGYHFEKEIGEALHRCLSSERFSGTITRKRLHETALSFRLLREYGHDVTADIFERFKDHNGNFKASLSRDVKGMLSLYEASFLGYEGEPILDEAKAFTSLHLRGGALDKGGSKSILLEQVNHALELPLHRRIQRLEARWYIESYANRRDANRVLLEAAKLDFNIVQSTLQSDLHEMSRWWKGMGLASKLSFSRDRLMECFFWTVGMVYEPQFSDLRKGLTKVASLITTIDDVYDVYGTLDELELFTTAVESWDVKAVQVLPDYMKICFLALYNTVNEFAYDALKEQGRDILPYLTKAWSDMLKAFLQEAKWCRDKHVPKFGDYLNNAWVSVSGVVILTHAYFLLNHSITKEALESLDNYHALLQRPSTIFRLCNDLGTSKAELERGEAASSIVCYMRESGASEEGAHKHIHNLLNETWKKMNKDRVTHSPFPKPFIETAINLARISQCTYQHGDAHGAPDSTAKNRIRSLIIEPIALDMGI 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2222 594 Pfam Terpene synthase family, metal binding domain 268 533 IPR005630 GO:0000287|GO:0010333|GO:0016829
Ssu3g2222 594 SFLD Terpene Cyclase Like 1 C Terminal Domain - Enzymatic 264 589 - -
Ssu3g2222 594 CDD Terpene_cyclase_plant_C1 50 587 IPR044814 GO:0010333|GO:0016102
Ssu3g2222 594 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 56 261 IPR008930 -
Ssu3g2222 594 SUPERFAMILY Terpenoid synthases 264 588 IPR008949 -
Ssu3g2222 594 Gene3D - 97 263 IPR036965 GO:0010333|GO:0016829
Ssu3g2222 594 Pfam Terpene synthase, N-terminal domain 60 237 IPR001906 GO:0010333|GO:0016829
Ssu3g2222 594 PANTHER TERPENE SYNTHASE 12-RELATED 44 589 - -
Ssu3g2222 594 SFLD Terpene Cyclase Like 1 C Terminal Domain 264 589 IPR034741 -
Ssu3g2222 594 PANTHER OS04G0344100 PROTEIN-RELATED 44 589 - -
Ssu3g2222 594 Gene3D Farnesyl Diphosphate Synthase 57 578 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2222 Ssu-Chr3 71946552 71951637 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2222 K12742 K19968 gmx:100782452 1000.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2222 3 71946552 71951637 Ssu3g2222 3 71946552 71951637 ECH
Ssu8g0826 8 13841864 13845586 Ssu3g2222 3 71946552 71951637 PCT