Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2190 ATGGTCGACAATAAGCCTCCAACGCGTCTTGAGGGAAAATATGCTGCAATAGTAGTCTGCTGGCTTCTTGGCAACGGGTGTCTTTTCTCGTGGAACAGCATGCTGACTATACAAGATTACTATGTTTACTTGTTTCcgAAATACCACCCTTCTAGGGTGCTTACTCTTGTATATCAGCCATTTGCAGTTGGAACACTAGCAATACTGGCTTACAAAGAGGACAAAATCAATACAAGAATAAGAAACCTATTTGGATATACTCTTTTCTTCATAAGCACTTTGTTGGTGTTAATTTTGGATTTAGCAACATCTGGTAAAGGAGGACTTGGAACTTTTATTGGTATATGCGCAATTAGTGGTGCGTTTGGAATAGCAGATGCTCATGCGCAAGGTGGAATGGTGGGAGACCTGTCCTACATGCTTCCAGAATTCATTCAGTCTTTCCTTGCTGGTGCAGCAGCATCAGGTGCACTAACATCTGCTATGAGGTTGATTACAAAAGCAGCATTTGAGAATTCTAAGGACGGTCTTCGCAAAGGAGCCATTCTGTTCTTTGCCATATCAACCTTCTTTGAGCTTCTTTGTGTTCTTCTCTATGCTTTTATCTTCCCTAAATTATCAATTGTGAAGTACTACCGTTCAAAAGCAGCATCTGAAGGATCCAAAACTGTTTCAGCGGACCTTGCTGCAGGTGGCATCCGGACCCCATCTGGAAGAGTCAATGAAGACGAAAAACAATTAGAGCGCAAAGGAAATAAGCAACTATTATTGGAAAACATTGATTATGCACTTGATTTGTTCCTAATATATGCTCTTACACTATCAATTTTCCCTGGATTCTTATCAGAAGATACTGGATCGCACAGTTTGGGTACCTGGTATGCTCTTGTTTTAATTGCCATGTATAATGTGTGTGATCTGATTGGAAGATACATTCCACTCTTGAAAATCCTGAAGTTGGAGTCCAGAAAAATGATCACAACTGCAATTGTTGGTCGCTTTTTATTTGTgccatcattttattttactgcaAAGTATGGCACGCAGGGCTGGATGATAATGTTGACATCTTTTTTGGGGTTATCCAATGGTTACCTCACTGTTTGTGTTCTCACTTCAGCCCCCAGAGGTTATAAGGGACCGGAACAAAATGCCTTGGGAAACCTGTTGGTGTTGTTTCTTCTTGGAGGTATTTTTGCAGGGGTAACACTTGACTGGTTGTGGTTAATAGGTAAAGGGTGGTGA 1245 0.4032 MVDNKPPTRLEGKYAAIVVCWLLGNGCLFSWNSMLTIQDYYVYLFPKYHPSRVLTLVYQPFAVGTLAILAYKEDKINTRIRNLFGYTLFFISTLLVLILDLATSGKGGLGTFIGICAISGAFGIADAHAQGGMVGDLSYMLPEFIQSFLAGAAASGALTSAMRLITKAAFENSKDGLRKGAILFFAISTFFELLCVLLYAFIFPKLSIVKYYRSKAASEGSKTVSADLAAGGIRTPSGRVNEDEKQLERKGNKQLLLENIDYALDLFLIYALTLSIFPGFLSEDTGSHSLGTWYALVLIAMYNVCDLIGRYIPLLKILKLESRKMITTAIVGRFLFVPSFYFTAKYGTQGWMIMLTSFLGLSNGYLTVCVLTSAPRGYKGPEQNALGNLLVLFLLGGIFAGVTLDWLWLIGKGW 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2190 414 PIRSF ENT 4 412 IPR002259 GO:0005337|GO:0016021|GO:1901642
Ssu3g2190 414 Pfam Nucleoside transporter 124 408 IPR002259 GO:0005337|GO:0016021|GO:1901642
Ssu3g2190 414 PANTHER EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 4 413 IPR002259 GO:0005337|GO:0016021|GO:1901642
Ssu3g2190 414 PANTHER EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 2 4 413 IPR030200 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2190 Ssu-Chr3 71122933 71125947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2190 3 412 Organic Solute Cotransporters AT4G05120 70.000 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2190 K15014 - gmx:100784933 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2190 3 71122933 71125947 Ssu3g2190 3 71122933 71125947 ECH
Ssu8g0850 8 14401593 14404832 Ssu3g2190 3 71122933 71125947 PCT