Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2189 ATGCAATCATTCACATCCACTCTCGCGTGCCTTGCTTTTTCTACGTCAGTGCTACTACTCCTATTTCTACCACCTTTTTCTAACGCCGGTCTACTCTCCGAACCGGTGAGCGAACCGGGCGAGTACCCTTCTTCAAACACGGTCCCGGCATTCCCGGTTCAGACGGAGGCCCAGACCTGCCGGCTCGACCTCTCCAACGAGCTCTTCGGCGGCGTGAAAGACGCGTGCGGGAAGGACCTCGACCGGAGCCGCTGCTGCCCCGTCCTCGCCGCGTGGCTCTTCGCCGCCCACGCCCGCACCGCCCTCGAGGTCTCCGCCGCGCCCCCGCCCGCCGCCGGCGACCTCCCCATGATGCCCGACGACTCCCAGAAGTGCGTCAACTCGCTCCAGGACTCGCTCCTCACTCGCAGCATAAGAATCCCCCAACCCAACGCCACGTGCGACGCCATCCTCTGCTTCTGCGGCATCAGACTCCACCAAATAACATCCTTAACCTGCAACGCAGCGTTTAACGTTTCGCTGTCTCGCAGAAACGCCACCCCGACCGCCGCCGTTCGCAACCTGGAGAACAATTGTCGTAACTCCTCCTACGCCGGTTGCACCAAATGCCTCGGTGCCCTACAAAAGGTGAAGGGGTACAGGAACGAGACGAAGGGGAGTTGGGGAAGTGACAGGGTAAACAAAATGTTCAACCGGGATTGCCAGCTGATGGGGTTAACGTGGTTGCTAGCGAAGAACAAAACGGCGTACATCCCAACCGTTTCGGCTGTGCTGCGCGCGATGATGTACAGTGCGCACCCGCACGAGTCCAAGTGTAGTCCCGATCAGGAGAACATGCCGCTGGCCGTTGATTCGCTTCAGTTGGAGAGCGGGCACGTGCCATCGCGGCCGTCCAATTTTTTTGTGACGGTTTTGCCCCCGGTGGTTCTCTTTTTTTCTGCTTTTGTGTAG 951 0.5941 MQSFTSTLACLAFSTSVLLLLFLPPFSNAGLLSEPVSEPGEYPSSNTVPAFPVQTEAQTCRLDLSNELFGGVKDACGKDLDRSRCCPVLAAWLFAAHARTALEVSAAPPPAAGDLPMMPDDSQKCVNSLQDSLLTRSIRIPQPNATCDAILCFCGIRLHQITSLTCNAAFNVSLSRRNATPTAAVRNLENNCRNSSYAGCTKCLGALQKVKGYRNETKGSWGSDRVNKMFNRDCQLMGLTWLLAKNKTAYIPTVSAVLRAMMYSAHPHESKCSPDQENMPLAVDSLQLESGHVPSRPSNFFVTVLPPVVLFFSAFV 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2189 316 PANTHER GPI-ANCHORED PROTEIN 14 300 IPR040376 -
Ssu3g2189 316 Pfam SPARK 56 213 IPR043891 -
Ssu3g2189 316 PANTHER OS07G0557700 PROTEIN 14 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2189 Ssu-Chr3 71098168 71100086 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2189 - - vra:106777532 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2189 3 71098168 71100086 Ssu3g2189 3 71098168 71100086 ECH
Ssu8g0852 8 14417484 14418667 Ssu3g2189 3 71098168 71100086 PCT