Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2166 ATGGCTTTCAAAGCTTCTTCTTTCCTTGCACTTGTTCTCATTTCCAATATCCTTCTTGCCACAGCAGTTGCTGGACGCAGCATTGCCAAGGACTCCAACACACAGGACAAGAAAGAGCCTCAGTTTTTGTTCAACTCTGATGGTGGAGTGTATATTCCAGGCATTGGACGTGTAGGATTTCCACCTAAATATCACTTTACACCTCAAAATCCATTTACTGGTGGCAATGGAGGAGCAGGAACAGGAACAGGAATAGGATCTGGATCAGGATCACCACCAGGTCGCAGTTATGTTCCAGGTGGTGATGACACTTTTGTCCCAAACCCTGGTTTTGAGGTTCCCATTCCTGGCAGTGGTAGTAGTGCTCCAGCACCGGTTCATCCATGA 387 0.4703 MAFKASSFLALVLISNILLATAVAGRSIAKDSNTQDKKEPQFLFNSDGGVYIPGIGRVGFPPKYHFTPQNPFTGGNGGAGTGTGIGSGSGSPPGRSYVPGGDDTFVPNPGFEVPIPGSGSSAPAPVHP 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2166 128 PANTHER CELL WALL PROTEIN-RELATED 1 128 - -
Ssu3g2166 128 MobiDBLite consensus disorder prediction 69 90 - -
Ssu3g2166 128 PANTHER CELL WALL PROTEIN-RELATED 1 128 IPR034565 -
Ssu3g2166 128 MobiDBLite consensus disorder prediction 66 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2166 Ssu-Chr3 70624099 70624485 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2166 - - vra:106755985 146.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2166 3 70624099 70624485 Ssu8g0883 8 15001144 15001512 PCT