Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2164 ATGATTTTTGATAAAGGGTCAATGCAATCTAAGTCTAACCTTGACTGCTTCCTCTGGCGTACGACACCTGTTGTACCGTCTCAGTTTCTTCCTAAGCACGAGATTCGAAACCTTAACCGTTTGTGGCACCCGTGGGAGAGAGAAGCGGTTGAGTACTTCACTTTGGGCGATCTCTGGAATCGCTTCCACGAATGGAGTGCTTATGGAGCTGGAGTCCCCATCACCTTGGACAATGGGGAGACACTTGTTCAGTACTATGTTCCTTACCTCTCCGCAATTCAAATATTCACCAGCAACACTTTCAGGGAAGAGACGGAGTCAGGTGAGTGTGAGACAAGGGATTCGTACAGCGATTCTTTCAGTGAAGAGAGTGAGTGTGATAAGCTATGGAGGTGGGATGGAACTTCATCAGAAGAGGGAGGAACTGAGCACGATTGTCTTTGGCATATGACTGACCGATTGGGTCACCTCTATTTCCAGTATTTTGAGAGATCAACTCCATATGGAAGAGTCCCTCTAATGGATAAGATTACTGCGTTAGCAGAAAGATACCCGGGGTTGATGTCACTAAGAAGCGTAGATCTTTCCCCAGCAAGTTGGATGGCTGTTGCTTGGTACCCCATATATCACATTCCCATGGGCAGAACAATTAAAGATCTTTCAACATGCTTCCTCACTTACCACACACTTTCATCTTCATTCCAAGACATGGACCTTGATGATGATACCGAGGGAGCCCACGAGAAGAGAAAGGAAGGTGAGGGCATCTCGCTGCCAGCATTTGGTTTGGCCACCTACAAGATGCAAGGGAATGTGTGGGTCTCAGGCAATTGTGGTAGGGACCAAGAAAGGCTAGTCTCACTGTTGAGCGTGGCTGATTCATGGTTGAAGCAACTAAGGGTCCAACATCATGACTTTAATTACTTCATGGGCCTTCGGCATGGCTAA 948 0.4705 MIFDKGSMQSKSNLDCFLWRTTPVVPSQFLPKHEIRNLNRLWHPWEREAVEYFTLGDLWNRFHEWSAYGAGVPITLDNGETLVQYYVPYLSAIQIFTSNTFREETESGECETRDSYSDSFSEESECDKLWRWDGTSSEEGGTEHDCLWHMTDRLGHLYFQYFERSTPYGRVPLMDKITALAERYPGLMSLRSVDLSPASWMAVAWYPIYHIPMGRTIKDLSTCFLTYHTLSSSFQDMDLDDDTEGAHEKRKEGEGISLPAFGLATYKMQGNVWVSGNCGRDQERLVSLLSVADSWLKQLRVQHHDFNYFMGLRHG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2164 315 Pfam Protein of unknown function (DUF789) 12 309 IPR008507 -
Ssu3g2164 315 PANTHER T15D22.8 4 313 - -
Ssu3g2164 315 PANTHER - 4 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2164 Ssu-Chr3 70525570 70528740 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2164 - - gmx:100799384 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2164 3 70525570 70528740 Ssu3g2164 3 70525570 70528740 ECH
Ssu8g0886 8 15055877 15058256 Ssu3g2164 3 70525570 70528740 PCT