Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1644 ATGTCTCTGTTTGGTGCTTATTCCATCAGCGAAGTTGGCAAGGATGTTGCTGGAGTTGCTGGGAACATCTTTGCTTTTGGGTTGTTTGTATCCCCCATACCCACATTTGGGAGAATTATCAGAAATGGGTCAACAGAAATGTTCTCAGGGTTGCCATATTTTTATACTCTCTTGAACTGCTTGATCTGCTTGTGGTATGGCACGCCTTTGATATCACCTGATAATCTGTTGGTGGCAACTGTTAATTCAATTGGAGCAGCCTTTCAGCTTATATACATAATTCTCTTCTTGATGTACGCTGAGAAAGCAAGAAAGGTGAGAATGATTGGATTGCTGCTAGCAGTTTTGGGCATATTTGTGATCATACTAGTTGGGAGCTTGCAAATTGATGACAGTGAAATGCGCCGGATGTTTGTGGGATTCTTGAGTTGTGCTTCTCTCATTTCAATGTTTGCCTCTCCATTGTTTATAATTGTATGCTTTTCATTTCCTAGATATCCATCCAtgtaa 510 0.4039 MSLFGAYSISEVGKDVAGVAGNIFAFGLFVSPIPTFGRIIRNGSTEMFSGLPYFYTLLNCLICLWYGTPLISPDNLLVATVNSIGAAFQLIYIILFLMYAEKARKVRMIGLLLAVLGIFVIILVGSLQIDDSEMRRMFVGFLSCASLISMFASPLFIIVCFSFPRYPSM 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1644 169 Pfam Sugar efflux transporter for intercellular exchange 18 103 IPR004316 GO:0016021
Ssu3g1644 169 Gene3D - 11 106 - -
Ssu3g1644 169 PANTHER RAG1-ACTIVATING PROTEIN 1 11 158 - -
Ssu3g1644 169 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET2 11 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1644 Ssu-Chr3 47371864 47372773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1644 14 158 Miscellaneous Gene Families AT3G14770 68.276 1.97e-66 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1644 K15382 - gmx:100790469 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1291 8 23538046 23539240 Ssu3g1644 3 47371864 47372773 ECH
Ssu3g1644 3 47371864 47372773 Ssu3g1644 3 47371864 47372773 ECH