Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1576 ATGGCCAAAACAACTCACATAGCAGTACTTTCAATCCCTGCATTTAGCCATCAAGCCTCCATTGTCGAGTTCTGCAAGAGACTCCTTCTTCTCCATCACCACTTCCACGTGACCTGCATCTTCCCCACCATTGATGCACCTCTCCCTGCCTCACTCACCTTCCTCGAATCTCTTCCTTCAAACATCGATTACACTTTCCTCCCTCCCGTTAACAAACAAGACCTTCCCCAAGATTCTCCCTCGGCAGTGCAAATCCAGCTCGCAGTGTCTCTATCCATGCCATCCTTCCGGCACGCGCTGGGGTCACTCCTTTCAACCACGTCACTCGTCGCTTTGATTGCTGATCCTTTCGCGAACGAGGCGCTGGAAATAGCAAAGGAGTTCAACCTCTTGTCCTACATATACTTCCCTCCTTCTGCCATGACACTCTCACTGTTCCTCCACTTGCCAACTTTACACGAGCAAGTTTCATGTGAATACAGAGACCACAAAGAAGCCATTCAACTTCCAGGCTGCGTACCAATTCGCGGCCGCGATCTCCCTGAGCATTTTCAAGATCGATCTAGTCTTTCTTATAAGTTAATTCTCGAGCGTTGCAAGAGACTCTCTCTTGCTAATGGTTTCTTGATTAATAGCTTCACCAAAATTGAAGAAGGTTCAGAGAGAGCCTTGCAGgaacataacaacaacaacaattctcGTGTTTATCTGATTGGGCCAATTATACAAACTGGGCTAAGTAGTGAACCAAAGGGGTCAGACTCAGAGTGTGTGAGGTGGTTGGAGAAGCAGAGGCTAAACTCTGTTTTATATGTGTCGTTCGGAAGTGGAGGCACACTTTCCCAACAACAGCTTaatgagctagcttttgggcTGGAGTTGAGTGGTCAGAACTTCTTGTGGGTTTTGAGAGCGCCTAATGATTCAGCAGATGGTGCTTACCTTGGGGCAGCTAGTGATGACCCTTTACGGTTTTTACCAGATGGGTTCTTGGAGAGAACCAAAGGACATGGTTTGGTTGTTACTTCTTGGGCTCCTCAGACCCAAATCCTTAGTCACGCTTCAACTGGTGGGTTTCTAACCCATTGTGGGTGGAATTCGGCGCTTGAGAGCATGGTGCTGGGAGTGCCAATGGTGACTTGGCCATTATTTGCTGAACAGAGAATGAATGCCGTTTTGTTAACCAAGGGCCTCAAAGTGGCGCTGAGGCCCAAATTTAATGAGAATGGCATAGCGGAGAGGGAGGAAATTGCTAAGGTGGTAAAAGGTCTAATGGTGGGTGAAGAAGGAAGTGAGATTCGTCAAAGAATTGAAAAGCTCAAAGAAGCAGCTGCTGATGCGTTAAAAGAAAGTGGGTCCTCCACAAGGGCACTTTACCAATTTGCCACTCAGATGGAGAACTTTCTGGGATATCCTTAG 1419 0.4609 MAKTTHIAVLSIPAFSHQASIVEFCKRLLLLHHHFHVTCIFPTIDAPLPASLTFLESLPSNIDYTFLPPVNKQDLPQDSPSAVQIQLAVSLSMPSFRHALGSLLSTTSLVALIADPFANEALEIAKEFNLLSYIYFPPSAMTLSLFLHLPTLHEQVSCEYRDHKEAIQLPGCVPIRGRDLPEHFQDRSSLSYKLILERCKRLSLANGFLINSFTKIEEGSERALQEHNNNNNSRVYLIGPIIQTGLSSEPKGSDSECVRWLEKQRLNSVLYVSFGSGGTLSQQQLNELAFGLELSGQNFLWVLRAPNDSADGAYLGAASDDPLRFLPDGFLERTKGHGLVVTSWAPQTQILSHASTGGFLTHCGWNSALESMVLGVPMVTWPLFAEQRMNAVLLTKGLKVALRPKFNENGIAEREEIAKVVKGLMVGEEGSEIRQRIEKLKEAAADALKESGSSTRALYQFATQMENFLGYP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1576 472 CDD GT1_Gtf-like 6 447 IPR002213 GO:0008194
Ssu3g1576 472 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 267 401 IPR002213 GO:0008194
Ssu3g1576 472 Gene3D Glycogen Phosphorylase B; 6 455 - -
Ssu3g1576 472 ProSitePatterns UDP-glycosyltransferases signature. 344 387 IPR035595 -
Ssu3g1576 472 Coils Coil 430 450 - -
Ssu3g1576 472 PANTHER GLYCOSYLTRANSFERASE 3 468 - -
Ssu3g1576 472 Gene3D Glycogen Phosphorylase B; 254 449 - -
Ssu3g1576 472 PANTHER GLYCOSYLTRANSFERASE 3 468 - -
Ssu3g1576 472 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1576 Ssu-Chr3 42514390 42515808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1576 2 466 Glycosyltransferase AT1G01420 45.610 8.27e-144 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1576 K08237 - gmx:100776809 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0763 2 40605185 40606594 Ssu3g1576 3 42514390 42515808 PCT