Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1571 atggCAAAAACAATTCACATAGCTATTGTTTCAAGTCCTGGTTTCAGCCACTTGGTCCCTATAATTGAGTTCACTAAGCGACTTGTCAAGCTTCACCCAAATTTTCATGTCACCTGCATCATTCCCTCACTTGGGTCAACCCCAGAATCCTCCAAAGCCTACCTTAAAACTCTTCCTTCAAACATAGATTCCATCTTTCTCCCTCCAATTAGCAAAGAACAATTACCCCAAGGAGCATACGTTGGAATCCTAATTCAACTCACTATTACTCTTTCTTTGCCATCAATACATGAGGTTTTGAAATCCTTGTCCTCTAAAGTCCATTTAACTGCGTTGGTGGCTGATGTTTTTGGATTTCAAGTGTTGGAATTTGCAAAGGAGTTCAACGCCTTGTCCTATATTTACTTTCCTGGTTCAGCTATGACATTGTCATTGCTTTTACACCAGCCAAAACTTGATGAGGAAGTTTCAGGTGAGTACAAGGACCTAAAAGAACCTATAAAGTTACCAGGTTGTGTACCACTCTTGGGGGTTGATCTTCCAGCTCCAACCCAAAATCGATCAAGTGAAGCTTACAAGAGTTTTCTTGAACGTGCCAAAGCAATGGTTATAGCTGACGGGATCATTATTAACACCTTCTTAGAAATGGAATTAGACGCTATAAGAGCATTGGAAGAGTTACAAAATAGGAAGATCAGATTATACACTATGGGACCCATCACACGAAAAGGGTCAAGCACCGAGGCTGATGAGTCTGATAAGTGTTTAAGATGGTTGGACACGCAGCCACCTTGTTCGGTGTTGTATGTTTCTTTTGGAAGTGGTGGAACACTCTCTCAACACCAAATCAACGAACTAGCTTGGGGTTTAGAATTGAGTTGTCAAAGGTTCTTGTGGGTTTTGAGAGCACCAAGTGATTCAGCTAGTGCTGCTTACCTTGAAGCTGCAAATGAGGGCCCTTTGCAATTTTTACCAAGTGGGTTTTTGGAAAGGACAAAGGAGAAAGGTTTGGTTGTGCCTTTATGGGCACCTCAGGTTCAGGTCCTTAGTCACAGTTCAGTTGGTGGGTTCCTAAGCCATTGTGGTTGGAACTCCACTTTGGAGAGTGTGCAAGAGGGAGTGCCTCTAATAACATGGCCACTCTTTGCAGAGCAGAGGATGAATGCAGTGATGTTAGCTGATGGACTTAAAGTGGCATTGAGGCCAAAATTTAACGAGGATGGCATAGTGGAAAAGGAGGAAATTGCAAAGGTGATGAAGTGTCTAATGGAAGGGGAAGAAGGTAAAGGAATGCGTGAAAGAATGAGGAATTTAAAAGAGTCTGCTGCTAATGCACTGAAAGATGGTTCTTCAACACAGACCTTGTCTAAGTTGGCTAGCCAATGGGAAAATTTGAGTGGGATTTAG 1407 0.4229 MAKTIHIAIVSSPGFSHLVPIIEFTKRLVKLHPNFHVTCIIPSLGSTPESSKAYLKTLPSNIDSIFLPPISKEQLPQGAYVGILIQLTITLSLPSIHEVLKSLSSKVHLTALVADVFGFQVLEFAKEFNALSYIYFPGSAMTLSLLLHQPKLDEEVSGEYKDLKEPIKLPGCVPLLGVDLPAPTQNRSSEAYKSFLERAKAMVIADGIIINTFLEMELDAIRALEELQNRKIRLYTMGPITRKGSSTEADESDKCLRWLDTQPPCSVLYVSFGSGGTLSQHQINELAWGLELSCQRFLWVLRAPSDSASAAYLEAANEGPLQFLPSGFLERTKEKGLVVPLWAPQVQVLSHSSVGGFLSHCGWNSTLESVQEGVPLITWPLFAEQRMNAVMLADGLKVALRPKFNEDGIVEKEEIAKVMKCLMEGEEGKGMRERMRNLKESAANALKDGSSTQTLSKLASQWENLSGI 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1571 468 ProSitePatterns UDP-glycosyltransferases signature. 342 385 IPR035595 -
Ssu3g1571 468 CDD GT1_Gtf-like 6 443 IPR002213 GO:0008194
Ssu3g1571 468 Gene3D Glycogen Phosphorylase B; 253 447 - -
Ssu3g1571 468 PANTHER GLYCOSYLTRANSFERASE 1 466 - -
Ssu3g1571 468 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 463 - -
Ssu3g1571 468 Gene3D Glycogen Phosphorylase B; 6 451 - -
Ssu3g1571 468 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 266 398 IPR002213 GO:0008194
Ssu3g1571 468 PANTHER UDP-GLYCOSYLTRANSFERASE 72B1 1 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1571 Ssu-Chr3 42340415 42341821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1571 2 463 Glycosyltransferase AT1G01420 48.180 7.59e-155 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1571 K08237 - gmx:100776274 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0765 2 40671090 40672502 Ssu3g1571 3 42340415 42341821 PCT