Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1487 ATGGCGCCACCActtttccttcttctcctcTCTTTCTTCGCCGCCACGGCCTCGTCCCTCACCTGCACCACCCAAAAGGTGACCGACGCCGCCAACAAGCTCTACTCCAACTGCGCGGACCTCCCCGCGCTGGATTCCTTCCTCCACTGGACCCACGACCCCGCCAACGCCTCCCTCGCGGTGGCCTTCGTGGCGGCGCTGCCGAGCCCCGGCGGGTGGGTCTCCTGGGGGATCAACCCCACGGGCACGGGCATGGCCGGCGCGCAGGTGCTCGCGGCGTACAAGGCCGGCGGCGCGGTGACCGTGAAGACCTTCGACCTCAAGTCGTACAGTGACATTGTTCCCGGGAAGCTGTCGTTCGAGGTGTGGGGCGTCAGGGGCGAGGAGTTGAACGGGACGATGAGGATCTTCGCGACCGTTAAGGTTCCGGAGAAGGAGGGGAGCGTGAACCACGTCTGGCAGGTGGGGCCCTCCGTCGCCGCCGGAAGGCTGGGCAAGCACGAGTTTGGTCCCGCGAATTTGAATTCCAAGGGGACGCTCAGCTTGAACGGGGCGCAGACTACTGATTCGGGGGCCGTCGACCCCGTCACCGTGAAGAAAAATATTCATGGAATTCTAAATGCTGTGAGTTGGGGCGTGCTGTTTCCCCTTGGAGTGATCATAGCAAGGTACTTGAGGACTTTTCCATCTGCAGATCCAGCTTGGTTCTATCTTCATGTTGGTTGCCAGGTATCTGCTTATGCCATTGGGGTTGCTGGATGGGGAACTGGTATGAAACTTGGAAGCGATTCAGTGGGTATTGAATACAGTGGCCATCGCAATATTGGAATTGCCCTCTTTTGTTTTGCCACTCTACAGATTTTCGCATTGTTCCTCAGGCCAATGAAGGATCACAAGTATCGGTATATCTGGAATATCTATCACCATAGCGTAGGATACAGTATAATTATCCTGGGAATCATCAACATATTCAGGGGCTTTAGCATCTTGAATCCTGATAAGAAATGGAAATCAACTTACATTGTAGTGATTATTGCACTGGCTGCTGTTGCCTTATTCTTGGAAGTGATCACATGGATTGTTGTGTTGAAGAGAAAGTCTAACAAGTCCACCAAAACTTATGATGGATACAACAATGGAGAAAATAGGCAACAGCCCCTTAACATCTAA 1170 0.5316 MAPPLFLLLLSFFAATASSLTCTTQKVTDAANKLYSNCADLPALDSFLHWTHDPANASLAVAFVAALPSPGGWVSWGINPTGTGMAGAQVLAAYKAGGAVTVKTFDLKSYSDIVPGKLSFEVWGVRGEELNGTMRIFATVKVPEKEGSVNHVWQVGPSVAAGRLGKHEFGPANLNSKGTLSLNGAQTTDSGAVDPVTVKKNIHGILNAVSWGVLFPLGVIIARYLRTFPSADPAWFYLHVGCQVSAYAIGVAGWGTGMKLGSDSVGIEYSGHRNIGIALFCFATLQIFALFLRPMKDHKYRYIWNIYHHSVGYSIIILGIINIFRGFSILNPDKKWKSTYIVVIIALAAVALFLEVITWIVVLKRKSNKSTKTYDGYNNGENRQQPLNI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1487 389 CDD DOMON_CIL1_like 35 184 IPR045265 -
Ssu3g1487 389 CDD Cyt_b561_FRRS1_like 174 356 - -
Ssu3g1487 389 Pfam Protein of unknown function (DUF568) 85 182 IPR045265 -
Ssu3g1487 389 Pfam Eukaryotic cytochrome b561 203 327 IPR006593 -
Ssu3g1487 389 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 6 374 - -
Ssu3g1487 389 Gene3D - 182 373 - -
Ssu3g1487 389 ProSiteProfiles DOMON domain profile. 44 156 IPR005018 -
Ssu3g1487 389 SMART 561_7 202 327 IPR006593 -
Ssu3g1487 389 PIRSF UCP037471 3 387 IPR017214 -
Ssu3g1487 389 ProSiteProfiles Cytochrome b561 domain profile. 163 363 IPR006593 -
Ssu3g1487 389 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 6 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1487 Ssu-Chr3 38913570 38916238 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1487 - - gmx:100776506 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1487 3 38913570 38916238 Ssu2g0647 2 36680035 36680754 PCT