Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1461 atGGGGTGTTTGGATGATGGGCGTTTCGCTGTTGAGATTGAGAATGGAGTGAGCAATGGATGTGGCGAAGTGGGTTTGGGGAATGATGGTGGTGCCATTGAGGCTGCTGTGAAGGTTTTGTTGGAGGGTCTAGGGGAAGATGTAAACAGGGAAGGTCTCAGAAAGACACCACTTCGTGTTGCTAAGGCCCTTCGTGAAGGAACCAGAGGTTACAGACAAAAGGTGAAGGACATTGTTCAAGGTGCTTTATTCCCTGAAGCTGGTCTAGATAATAGAGTTGGCCATGCAGGTGGAGCGGGTGGACTTGTGATTGTTCGAGATCTTGACTTGTTTTCCTATTGTGAGTCCTGCTTGCTTCCATTCCAGGTCAAGTGTCATGTGGGTTATGTCCCCTCTGGTGAAAGAGTTGTCGGTTTAAGCAAGCTCTCTCGTGTTGCTGATGTATTTGCAAAACGGCTTCAAGAGCCTCAGCGTCTGGCAGATGAGGTCTGTTCTGCTTTGCATCAGGGAATAAAGCCAGCAGGTGTTGCTATCATACTTCAATGTACACATATCCACTTTCCAGACATAGAATCAGTCTTTCTTGACTCAAACCACCAAGGATGGGCAAAGATACTTGTTTCCTCAGGTTCTGGGGTTTTTGAGAACAAAAATGCAGATGTATGGGCTGATTTCTTTAATCTTCTTAAATTTAGAGGCATCAATGCagataaaattcattttagagGATCTTCTGATCCATGCTTGTGTCCTTCTCAGTCTTCTCTTTCTGCCAAAGTTTCCTCCAAAATTGGACCAGTCAATCCTGCAATGGTTACTGCAGTAGCTTCAATTATTGAATCTTTGGGAGAAGATCCTTTGAGGGAGGAGCTTATAGGGACTCCAAGTAGATTTGTGAAATGGTTGATGAACTTTCAAAACAGTAACTTTGATATGAAGCTGAATGGTTTTCTTTGTGGTGGGGTAGATTCTTTGAATGTCAACGAGGAGGTTAacttcaacaacaaaaatatatactgTGAGCTGAACATACCCTTTTGGTCACAATGTGAGCATCATTTGCTTCCATTTCATGGTGTTGTTCACATAGGATACCTCATGTCTGATGGATTCAATCCTATCGGAAAATCGCTTTTACAATCAATAGTACATTTTTATGGTTTCAAGCTCCAAGTTCAGGAAAGGCTTACCAGGCAGATAGCTGAAACCATTTCCCCACTGTTAGGTGGAGATGTGATAGTAGTTGTAGAGGCAAGCCACACATGTATGATTTCTAGGGGAATTGAGAAGTTTGGAAGTAGTACAGCTACCATTGCTGTGTTAGGACGATTTTCAACCGACCCCACCTCAAGGGCTTCATTCTTGCAGAGTATTCCAAGTCCTACATCATCTGGGGAGCAATGA 1404 0.4252 MGCLDDGRFAVEIENGVSNGCGEVGLGNDGGAIEAAVKVLLEGLGEDVNREGLRKTPLRVAKALREGTRGYRQKVKDIVQGALFPEAGLDNRVGHAGGAGGLVIVRDLDLFSYCESCLLPFQVKCHVGYVPSGERVVGLSKLSRVADVFAKRLQEPQRLADEVCSALHQGIKPAGVAIILQCTHIHFPDIESVFLDSNHQGWAKILVSSGSGVFENKNADVWADFFNLLKFRGINADKIHFRGSSDPCLCPSQSSLSAKVSSKIGPVNPAMVTAVASIIESLGEDPLREELIGTPSRFVKWLMNFQNSNFDMKLNGFLCGGVDSLNVNEEVNFNNKNIYCELNIPFWSQCEHHLLPFHGVVHIGYLMSDGFNPIGKSLLQSIVHFYGFKLQVQERLTRQIAETISPLLGGDVIVVVEASHTCMISRGIEKFGSSTATIAVLGRFSTDPTSRASFLQSIPSPTSSGEQ 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1461 467 Gene3D - 96 232 IPR043133 -
Ssu3g1461 467 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 23 230 - -
Ssu3g1461 467 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 268 459 - -
Ssu3g1461 467 Pfam GTP cyclohydrolase I 33 185 IPR020602 -
Ssu3g1461 467 Pfam GTP cyclohydrolase I 273 458 IPR020602 -
Ssu3g1461 467 Gene3D - 29 79 IPR043134 -
Ssu3g1461 467 Gene3D - 267 309 IPR043134 -
Ssu3g1461 467 Gene3D - 328 460 IPR043133 -
Ssu3g1461 467 PANTHER GTP CYCLOHYDROLASE I 1 1 463 - -
Ssu3g1461 467 PANTHER GTP CYCLOHYDROLASE I 1 463 IPR001474 GO:0003934|GO:0046654
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1461 Ssu-Chr3 38010543 38013963 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1461 K01495 - gmx:100783814 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1461 3 38010543 38013963 Ssu2g0589 2 34129509 34131941 PCT