Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1438 ATGGCTCAACGTACTCATGTTCCAAAGTTCGGTAATCAGGAGAATGAAGAGAATGTTTCAGATATAGCTTATTCTGACAAAGTCCAGAAAGGTCAACCTGGTTCAAAGATGACTAATCCAAATGACCCCAAGGAAAATTCAGATCTAGTTTCTTCTGCTGACCTAGCCCTAGCAAAACCCAGAGTTCATTCAGAGGATCCATCTGGAAAGGGATCAGGGAGATCAACACATGAGTTACCAAAGAGCAGGGAGGACGGTGATCCTAAACATTTTACTGACTCTCCAGCTCGCCATGACAACCGTAGAAGGCCTACAAGACAAAGTACTGGGTCTGAACACAACATTGACCGTTCACCACTTCATCGCCAGGCAAAAACCCCTGGCAGAGATAGTCCTTCTTGGGAAGGAAAGAATTCATATGACAACAGTCATGGTACACCAGGAAAGTCCCGATTAAGACCGTTTCACCGAGGGGATGAAACTCCTGATAAAGGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAATAACCCTGCATCAGCTGATGGCTACACTCACATTTTCAACAAAGTGCGGGAGGAGAAACAGGTGGGGGCTGGACACGTGCCAGGCACGCCTAATGCGAGACAATTTGCTGCTCGGAACCAACATGCTGACGACAAAGCTCAGAGCTGCTGCTTTTGCTGGGGCAGAAAATGA 702 0.4715 MAQRTHVPKFGNQENEENVSDIAYSDKVQKGQPGSKMTNPNDPKENSDLVSSADLALAKPRVHSEDPSGKGSGRSTHELPKSREDGDPKHFTDSPARHDNRRRPTRQSTGSEHNIDRSPLHRQAKTPGRDSPSWEGKNSYDNSHGTPGKSRLRPFHRGDETPDKGAAVPKFGEWDENNPASADGYTHIFNKVREEKQVGAGHVPGTPNARQFAARNQHADDKAQSCCFCWGRK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1438 233 MobiDBLite consensus disorder prediction 1 19 - -
Ssu3g1438 233 MobiDBLite consensus disorder prediction 1 179 - -
Ssu3g1438 233 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 162 197 IPR008700 -
Ssu3g1438 233 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 107 230 IPR040387 -
Ssu3g1438 233 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 101 IPR040387 -
Ssu3g1438 233 MobiDBLite consensus disorder prediction 132 146 - -
Ssu3g1438 233 MobiDBLite consensus disorder prediction 59 124 - -
Ssu3g1438 233 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 107 230 - -
Ssu3g1438 233 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 1 101 - -
Ssu3g1438 233 MobiDBLite consensus disorder prediction 152 170 - -
Ssu3g1438 233 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1438 Ssu-Chr3 37163817 37169176 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1438 K13456 - gmx:100499220 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1438 3 37163817 37169176 Ssu2g0566 2 32981134 32985838 PCT