Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0566 ATGgcaCAACGTTCTCATGTACCAAAATTTGGCAATTGGGATAGTGGAGAGAATGTTCCTTATACAGCATATTTTGACAAGGCCCGGAAAGGTCGAACTGGCGCAAGGATAATAAACCCAAATGACCCTGAGGAGAATTCAGATTTAGGTCTTGACAATCTATCATCTGATCAACTACCTCCTTCCAAACCCAGAGTTAATTCAGAGGATCTACCTAGAAAGGGATCACATTCGGAAGATGATCCTAAGCATTTTATCGACTCTCCAGCTCGTCATGACAATGTAGGGAGTAGGAGTGGCAGCAGAAGCCATGGAGTAGGTTCTGCTGATAACCACAGAAGACCTTCGATGCAAAGTGCTGGGTCTGAGTACAGCATTGAACGTTCACCGCTTCATCGCCAGGCTAGAGCCCCAGGCAGAGACAGTCCTCAATGGGAAGGAAAGAATTCTTATGACGGCAGCCAGGGAACACCAGGGAGATCTCGGTTAAAACCAGTTAATCGAGGAGATGAAACACCTGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGATTGGGATGTGAACAACCCAGCATCAGCAGATGgctttactcacattttcaacAAAGTGAGGGAGGAGAGACAGAGCGGGCCAGGACAAGTGCCGGGCACTCCTAATGAGAGACCACAAGTTATCCGGGGCCAACCTGTCAATGACAAAGTCCAGTGTTGCTGCTTTGGGTGGGGCAAAAAATGA 735 0.4626 MAQRSHVPKFGNWDSGENVPYTAYFDKARKGRTGARIINPNDPEENSDLGLDNLSSDQLPPSKPRVNSEDLPRKGSHSEDDPKHFIDSPARHDNVGSRSGSRSHGVGSADNHRRPSMQSAGSEYSIERSPLHRQARAPGRDSPQWEGKNSYDGSQGTPGRSRLKPVNRGDETPDKGAAVPKFGDWDVNNPASADGFTHIFNKVREERQSGPGQVPGTPNERPQVIRGQPVNDKVQCCCFGWGKK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0566 244 MobiDBLite consensus disorder prediction 67 91 - -
Ssu2g0566 244 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 173 209 IPR008700 -
Ssu2g0566 244 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 32 IPR008700 -
Ssu2g0566 244 MobiDBLite consensus disorder prediction 147 161 - -
Ssu2g0566 244 MobiDBLite consensus disorder prediction 94 125 - -
Ssu2g0566 244 MobiDBLite consensus disorder prediction 46 63 - -
Ssu2g0566 244 MobiDBLite consensus disorder prediction 28 190 - -
Ssu2g0566 244 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 241 IPR040387 -
Ssu2g0566 244 MobiDBLite consensus disorder prediction 206 228 - -
Ssu2g0566 244 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 1 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0566 Ssu-Chr2 32981134 32985838 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0566 K13456 - gmx:100499218 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1438 3 37163817 37169176 Ssu2g0566 2 32981134 32985838 PCT