Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1432 ATGTATGCTGATCGAGTGGAGAGTGGAACTCGGAGATCAGTGAAGGAACGCCTTGATGGGAATCTTCTCACTGACTCTACTCGCCAACACAAAATCACCGGAAAGAGGCAGAGGCAAGATGACAAGTGGAAACATGATCTCTATGATGATAATGAACCCCGGCTCTCTAATCGCAAGGTCACTGCTCAAGATCTTCGTTTGAAGCTTCAAAAGAAAGGTCTTCACCCTGGAGGAGGTCAAACTGGAAAGAGTTCTGTTCCTGGTGAGCGGGATCTCCGTGAAAGGCTATCGGGGACAATGACTCCACAACCAAAAAACTATGACCCACCAAAGCCTAAGGTGGCTGCTAAACCTAGCAGTAAAAGTATTGATGTTGAGACTCCTGCAGTACATATCAAAAGACCAGCTAATCCAACTCCTAAAAAGTTGTCCCGAAAGGCTGACACTTCATTGGATGAGTTTTTGCAGTCCTTGGGTCTCGAAAAGTATCTCATAAGTTTTCAGGCTGAAGAAGTTGATATGACTGCACTCAATCATATGACTGATGAGGATCTCAAGGCGATGGGTATACCAATGGGACCGAGAAAGAAGATACTTTTAGCCTTAGAGTCTAAAGGCTGA 621 0.4509 MYADRVESGTRRSVKERLDGNLLTDSTRQHKITGKRQRQDDKWKHDLYDDNEPRLSNRKVTAQDLRLKLQKKGLHPGGGQTGKSSVPGERDLRERLSGTMTPQPKNYDPPKPKVAAKPSSKSIDVETPAVHIKRPANPTPKKLSRKADTSLDEFLQSLGLEKYLISFQAEEVDMTALNHMTDEDLKAMGIPMGPRKKILLALESKG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1432 206 ProSiteProfiles SAM domain profile. 146 200 IPR001660 GO:0005515
Ssu3g1432 206 Gene3D - 148 206 IPR013761 -
Ssu3g1432 206 Pfam SAM domain (Sterile alpha motif) 147 203 IPR001660 GO:0005515
Ssu3g1432 206 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 117 193 - -
Ssu3g1432 206 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 1 108 - -
Ssu3g1432 206 PANTHER OSJNBA0060P14.15 PROTEIN 117 193 - -
Ssu3g1432 206 PANTHER OSJNBA0060P14.15 PROTEIN 1 108 - -
Ssu3g1432 206 CDD SAM_superfamily 150 203 - -
Ssu3g1432 206 MobiDBLite consensus disorder prediction 1 124 - -
Ssu3g1432 206 SMART SAM_4 143 206 IPR001660 GO:0005515
Ssu3g1432 206 MobiDBLite consensus disorder prediction 1 71 - -
Ssu3g1432 206 SUPERFAMILY SAM/Pointed domain 148 203 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1432 Ssu-Chr3 36887002 36893616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1432 37 205 Glycosyltransferase AT3G07170 60.000 6.37e-63 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1432 - - gmx:100527300 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1432 3 36887002 36893616 Ssu2g0557 2 32363580 32379653 PCT