Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1153 ATGTGTTTCAGATCTATTTTCGAGACACTTGAAAAAATGGAAACAATGTTGCCTCAGAAGCAATCAGAGGAAGCTATAGTCACAAGCTTGAACGAGACAGAGAGTGAAGTGGGTGTGAGGGAAGAAGCAGAGAAGGAGTTGCAAGACCACTCCATGTTCAGCATCAAGAGCCTCCTCTGGCATGGAGGCTCTGTTTGGGACGCATGGTTCAGCTGTGCTTCAAatcaaGTGGCTCAAGTGCTGTTGACACTGCCCTATTCTTTCTCCCAACTGGGCATGCTATCAGGGATTTTGCTTCAGATTTTCTATGGAATCATGGGAAGTTGGACAGCCTATCTAATCAGTGTCCTCTATGTGGAGTACCGTAccagaaaggaaaaagaaaatgtcagTTTTAAGAACCATGTCATTCAGTGGTTTGAAGTGCTTGATGGGTTGCTGGGTCCGTATTGGAAAGCGGTGGGGCTAGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTGATTCAGCTCATAGCATGTGCTAGTAACATCTACTACATAAATGACCATTTGGACAAACGGACTTGGACTTATATCTTTGGTGCTTGCTGTGCTACCTCTGTGTTCATACCCTCCTTCCACAATTATCGTATTTGGTCATTTCTGGGACTTGGAATGACCACTTACACTGCTTGGTACATGGCTATAGCAGCTCTTATTCATGGCCAGGCAGAAAATGTGACGCACACGGGTCCAACAAAGCTAGTGTTGTACTTCACCGGAGCCACCAACATACTGTACACGTTTGGTGGACATGCAGTTACTGTAGAGATTATGCACGCCATGTGGAAGCCACAGAAGTTCAAGTACATATACTTGCTGGCCACTTTGTACGTTTTCACACTAACGATTCCTTCTGCTGCTGCGGTTTACTGGGCTTTTGGTGATGAGCTTCTCAATCATTCTAACGCCTTCTCTCTCCTCCCCAAAAATCGCTTTCGTGATGCTGCTGTAATCCTCATGCTCATTCACCAGTTCATCACATTCGGTTTTGCGAGTACTCCACTGTACTTTGTCTGGGAGAAGGTAATTGGGATGCATGACACAAGAAGCATTTGTCTGAGGGCACTAGCAAGGTTGCCGGTGGTGATACCCATATGGTTCTTGGCCATAATCTTCCCTTTCTTTGGGCCCATAAACTCTGCAGTTGGAGCTCTACTGGTTAGTTTCACCGTCTACATCATCCCCTCCACAGCCCATATGCTCACTTACAGAAAAGCCTCAGCCAGACAGAATGCCGCAGAGAAGCCTCCTTTCTTTATGCCAAGCTGGACTGCAATGTATGTGTTCAATGCATTCATTGTGGTGTGGGTTTTGGTGGTTGGGTTTGGGTTTGGAGGATGGGCCAGCATGTCCAACTTCATTAAGCAAATTGACTCATTTGGGCTCTTTGCCAAGTGCTACCAGTGCAAGTCCCCGTCTCCACCAGCCATGGCAGCAGCACCACCCCCTCATGCCCATCATCACTGA 1512 0.4616 MCFRSIFETLEKMETMLPQKQSEEAIVTSLNETESEVGVREEAEKELQDHSMFSIKSLLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILLQIFYGIMGSWTAYLISVLYVEYRTRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCATSVFIPSFHNYRIWSFLGLGMTTYTAWYMAIAALIHGQAENVTHTGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVFTLTIPSAAAVYWAFGDELLNHSNAFSLLPKNRFRDAAVILMLIHQFITFGFASTPLYFVWEKVIGMHDTRSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSTAHMLTYRKASARQNAAEKPPFFMPSWTAMYVFNAFIVVWVLVVGFGFGGWASMSNFIKQIDSFGLFAKCYQCKSPSPPAMAAAPPPHAHHH 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1153 503 Pfam Transmembrane amino acid transporter protein 61 454 IPR013057 -
Ssu3g1153 503 PANTHER AUXIN INFLUX TRANSPORTER 17 487 - -
Ssu3g1153 503 PANTHER OS05G0424000 PROTEIN-RELATED 17 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1153 Ssu-Chr3 27268762 27274481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1153 19 502 Organic Solute Cotransporters AT2G21050 75.000 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1153 K13946 - gmx:100810532 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1153 3 27268762 27274481 Ssu3g1153 3 27268762 27274481 ECH
Ssu3g1153 3 27268762 27274481 Ssu4g2337 4 56599423 56606218 PCT