Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1151 ATGGACCAAACTCAAAATGAGTCTGGTTGGATGCATTCTATCAAAGTGACACTGGGGTCTCTAGATCACAGAGAGGTTAAATCCTTCATAAGCAGCATCCCTAGTGTTTCAAGCAAGCTTAGAAAATCCAATGAGGAAGCATACTCACCAAAGTTTGTCAGCATTGGACCTCTACACAGGGGAACCAGTAGCCACCTTCTGGCCATGGAAGAGCACAAGTGGCGTTGCATGCTGGCCCTTCTTCACAGAACTCAAAACCCAGTTTCAACCTTGGATGAATGTGGCACAGTCATTCTAGGCTTGGATGATGCAGTTCGTGCAAGCTATGGAGGTAACATCAAATATGAACCCCATGAGCTAGCCAAAATAATGTTACTTGATGGCTCCTTTTTGTTAGAACTCCTCCTTAGATGTGCACCACCAAATATGGTGCCTCAAATTCCAAAAGAAGATAGCCATAATGGTTCTTCTTCAGATCTAATACTAGGACACAAAGAGGTGTTCTTGTCTATTCTCACTGATTTCACTCTTCTAGAGAACCAAATGCCCTTTTTTGTTCTCAAGACATTGGCTAGGATACTTTTCCCCAATGTCTTCACAAGTGAAGCTGATCACCTTGTTGCTGATCTCACACTGTCCCTCTTCAGCTACCCTTTGATCCGCTGTCCTAGTGTGGCGCATTTTCTTCATCTCATGCACTTGTCCTCCACTGTTGATGAGGGGCAGAAGGTGAAACAAGCTCAGCAAGAACTAAAGCGTTGTGCCACAAGGCTTAGAGCTGCTGGGGTAACAATTAGGAAAGTGGAAAGGCACAGCAAGCTGGTTAATTGGTTTGGCTTTGACATAAGATTTGCCCAAGGGGTGCTTGAAATCCCACCACTGCATTTAGTTGAAACAACTGAGGTCTATTTGAGGAATTTCATTGCATGGGAGCAAAGCAGAATTGGCATCAACAGGCAATTCACTTCTTATGCTTTGTTTCTTAGAGGCTTGATGTGTTCTCTGAAAGATATTGAGCTGCTTGTGGACAGTGGTATTTTGGTGAAAGATACTAAGATCAGCAACAGAGATTTGCTCACTTTGTTTGCCACAATCACAAAGGGAGTGGACCAAATGGACTCTAGTTACAGTAAACTTTGTGAGGACTTGAATGCTTACTCAGCAGTGAACGCCTTGAAGAAGTTCCCTATACTGATGTGGCATGGTTGCAACCTTTGTGTAGAATGTATCAGATACTCTTGCAAACACAGCTATAAAATCTTGATTAGAGATCATATCCCAAATGTGTGGAAACTGATAGGAATTGTGGTAGCTGCAGCGCTGCTTGCTCTTACCATTATGCAAACCTATTATTCATCCCGTGGCTGA 1368 0.4327 MDQTQNESGWMHSIKVTLGSLDHREVKSFISSIPSVSSKLRKSNEEAYSPKFVSIGPLHRGTSSHLLAMEEHKWRCMLALLHRTQNPVSTLDECGTVILGLDDAVRASYGGNIKYEPHELAKIMLLDGSFLLELLLRCAPPNMVPQIPKEDSHNGSSSDLILGHKEVFLSILTDFTLLENQMPFFVLKTLARILFPNVFTSEADHLVADLTLSLFSYPLIRCPSVAHFLHLMHLSSTVDEGQKVKQAQQELKRCATRLRAAGVTIRKVERHSKLVNWFGFDIRFAQGVLEIPPLHLVETTEVYLRNFIAWEQSRIGINRQFTSYALFLRGLMCSLKDIELLVDSGILVKDTKISNRDLLTLFATITKGVDQMDSSYSKLCEDLNAYSAVNALKKFPILMWHGCNLCVECIRYSCKHSYKILIRDHIPNVWKLIGIVVAAALLALTIMQTYYSSRG 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1151 455 Pfam Plant protein of unknown function 33 444 IPR004158 -
Ssu3g1151 455 PANTHER DUF247 DOMAIN PROTEIN 5 455 - -
Ssu3g1151 455 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED 5 455 IPR004158 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1151 Ssu-Chr3 27247881 27249248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1151 - - gmx:100810805 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1151 3 27247881 27249248 Ssu3g1151 3 27247881 27249248 ECH
Ssu3g1151 3 27247881 27249248 Ssu4g2342 4 57038656 57041146 PCT