Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1123 ATGGGCGATTTCAACCTCGCCCTGGTGATCGTGGCTGTGGTGGTGTGCGTGGTGGTGTTCCTCTTCAACGTGTACCTGCTCGTGAACTACCAGCACCCCGACGACGCCAACCAGGCCTACTTCCCCAAATTCGTCGTCGTTTTGGGGCTCTCCGTCGCCGCCATCTCGATCCTTATGCTCCCCGCCGACGTGGCGAACCGCCAGGCGTGCCGCCACGCCATCTACAACGGCGCGTGCAGCCTCACGCTCCCCATGAAGGACCTCTGGCTCGCCGTCTACATCCTCGACGCGGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCAGGACAAgaGTGTGGGGAAGAGGATTAAGAGTGCGCTGTTGTGGATGGTGACCACGGCGATAGTGTGCGCCCTCGTGCTGGGGATTTTATACGGGCTTGTTGGTAAGGTGGACTTTACTGTTAGGCATCTCTCTTCATCCACAACTTCATTTCCTAGCACATGGACATTCAATAGTGGTCAACAATGTATTGGAAGCGGTGTCCATCAGTGCTCAGCATACTCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTGTTGCACTTGCTACTATTGTTGGATCTGTGCTTTTTGCTATATTTGGCGGTGTTGGTATTGCCTGTCTTCCATTAGgacttatattttcatttattcggCGTCCAAAGGCTGTTATCACTCGCTCACAGTATATCAAGGAAGCCACTGAACTGGGTAAAAAAGCAAGAGAACTAAAGAAAGCAGCTGAGGCACTCCATCAGGAAGAAAGAAGTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGAAGTCGAGAAGGAGTTGTTTCAATTAGAAGAAGACGTAAAGCTTCTGGAAGAGGTGTATCCACAAGGGGAAAAGGCAGAGACAACATGGGCACTAACAGTTCTTGGTTATCTGGCAAAATTTGTTTTGGGAATTTTAGGGTTGGTTGTTTCAGTGGCCTGGGTTGCTCATATTATTATCTACCTATTAATTGATCCTCCACTTTCTCCTTTCCTGAATGAAGTTTTCATCAAGCTAGATGATATCTGGGGTCTTCTTGGCACTATTGCATTTGCATTTTTCTGCTTCTACCTTCTCGTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTACTATACATCCCATGAAGTGGGGAGCAACTCTCATGAACTCTTTTCTATTCAATGTGGGCCTTATTCTTCTTTGTTCCATTAGtGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGCTGCCCAAGAAATATTTGGCCACACTTTGGAGTCTCTTCGaggaattaaatatttgtacaaGTACAATGTATTCCAAATTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTATGCTGCCTTTGGATGGAGAAGAAAAAAGCCCAGTGGCAGGTTCCAATTGTCTACATGA 1530 0.4621 MGDFNLALVIVAVVVCVVVFLFNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACSLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALLWMVTTAIVCALVLGILYGLVGKVDFTVRHLSSSTTSFPSTWTFNSGQQCIGSGVHQCSAYSASPSSEKTWTMRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAAEALHQEERSGSKGRKFRKNVKEVEKELFQLEEDVKLLEEVYPQGEKAETTWALTVLGYLAKFVLGILGLVVSVAWVAHIIIYLLIDPPLSPFLNEVFIKLDDIWGLLGTIAFAFFCFYLLVAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRKKPSGRFQLST 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1123 509 Coils Coil 256 276 - -
Ssu3g1123 509 Coils Coil 283 310 - -
Ssu3g1123 509 PANTHER BNAC05G43630D PROTEIN 1 508 - -
Ssu3g1123 509 Pfam LMBR1-like membrane protein 270 487 IPR006876 -
Ssu3g1123 509 Pfam LMBR1-like membrane protein 9 292 IPR006876 -
Ssu3g1123 509 PANTHER LIMR FAMILY PROTEIN DDB_G0283707-RELATED 1 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1123 Ssu-Chr3 26678304 26683553 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1123 K14617 - gmx:100816750 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1123 3 26678304 26683553 Ssu4g2369 4 57940961 57948319 PCT