Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1117 ATGGTAGGCCCGATGAGATCTCAGATTGTGCTCTTTGGCTCCTCTATTGTTCAGTTGAGTTTCGACAATGGTGGTTGGGGTGCAATTCTAGCTAATTTGTATGCTAGAAAGGCGGACATAATATTGCGAGGATACTCAGGTTGGAACTCAAGGCAAGCTTTGGATGTTCTGGATGAAGTTTTTCCCAAGGATGCTCCTGTGCAGCCAGCATTGATAATTGTGTACTTTGGCGGCAATGATTCTGTTCACCCTCACCCATCTGGCCTTGGTCCTCATGTACCCCTCGAAGAATATGTTGAAAACATGAGGTTGATTGCTAACCATCTTAAGAGCCTCTCGGATCATATTCGCCTTATATTTCTCACCTCTCCTCCCATCAATGAACAACAAATGCTCAAAAAGCTCAGGTTCATACGTGCAACGCAATCAGGAAGAACCAATGAATCCTGTGGAAAATATGCAGAGGCATTAATGGAGCTTTGTGAGGAGCTGAATGTCAAGGCCATTAATCTGTGGTCTGCAATTCAGACAAGGGATGACTGGTTAGATGTTAGCTTCACGGATGGAGTTCATCTATCAGCTGAGGGAAGCAAGGTGGTGGTTAAGGAAATATTAAGGGTTCTCAGGGAAGCAGATTGGAAGACTAGTCTACATTGGATGTCAATGCCAACTGAATTTGCTGAAGATTCACCGTATTATCCTCCCAGTCCTGATGGAACTACCACTATTAATAGTTGTCTCTTGATTACCTATTTTGACCATCGTTCTGCCATTGTCATGGCTAAAGAACAGGAAAAAGGAAAGACAATGGTTTTCCTGAGTGGTGGGGAGGTCACCCTCGTGGAACTGGCTGAGGAATTGGATGTGGCAAGGGAGGTACAACTTTTGGTGGTAGAGTATATGGAGGAGCAATCAAAGCAAATGCAACACAAGCCTTGA 939 0.4441 MVGPMRSQIVLFGSSIVQLSFDNGGWGAILANLYARKADIILRGYSGWNSRQALDVLDEVFPKDAPVQPALIIVYFGGNDSVHPHPSGLGPHVPLEEYVENMRLIANHLKSLSDHIRLIFLTSPPINEQQMLKKLRFIRATQSGRTNESCGKYAEALMELCEELNVKAINLWSAIQTRDDWLDVSFTDGVHLSAEGSKVVVKEILRVLREADWKTSLHWMSMPTEFAEDSPYYPPSPDGTTTINSCLLITYFDHRSAIVMAKEQEKGKTMVFLSGGEVTLVELAEELDVAREVQLLVVEYMEEQSKQMQHKP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1117 312 SUPERFAMILY SGNH hydrolase 8 211 - -
Ssu3g1117 312 Pfam GDSL-like Lipase/Acylhydrolase family 11 198 IPR013830 -
Ssu3g1117 312 Gene3D SGNH hydrolase 6 232 IPR036514 -
Ssu3g1117 312 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 250 - -
Ssu3g1117 312 CDD Isoamyl_acetate_hydrolase_like 8 208 - -
Ssu3g1117 312 PANTHER ISOAMYL ACETATE-HYDROLYZING ESTERASE 1 1 250 IPR045136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1117 Ssu-Chr3 26588364 26594567 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1117 K23978 - gmx:100792188 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1117 3 26588364 26594567 Ssu4g2370 4 57950272 57953366 PCT