Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1041 ATGCCGTGCCTCACCCTTTCAACCAACGTCAGCCTGGATGGGGTAGACACCTCTTCCATACTCTCCGAAGTCATCTCCACCGTCGCCAAGATCATGGGTAGACCTGACTCTTATGTGATGACTTCACTGGAAGGATCAATACCCACATGTTTTGGTGGGACTGAGGAGCCAGCTGCCTATGGTGAACTAGTGTCCATTGGTGCTCTCAACCCGGAATTGAACAAGAAACTGAGTGCTGAAATTGCCTGCGTTCTTGAAACCAAGTTGTCGGTGCCCAAGTCACGGTTTTTCTTAAAATTCTATGACATTGAGgGCTATAATTGTGGATTCAATGGATCTATCATGGTGATCGAGTCcaattga 363 0.4656 MPCLTLSTNVSLDGVDTSSILSEVISTVAKIMGRPDSYVMTSLEGSIPTCFGGTEEPAAYGELVSIGALNPELNKKLSAEIACVLETKLSVPKSRFFLKFYDIEGYNCGFNGSIMVIESN 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1041 120 PANTHER MACROPHAGE MIGRATION INHIBITION FACTOR-LIKE PROTEIN 1 119 - -
Ssu3g1041 120 Gene3D Macrophage Migration Inhibitory Factor 2 117 IPR014347 -
Ssu3g1041 120 Pfam Macrophage migration inhibitory factor (MIF) 2 115 IPR001398 -
Ssu3g1041 120 PANTHER D-DOPACHROME DECARBOXYLASE 1 119 IPR001398 -
Ssu3g1041 120 SUPERFAMILY Tautomerase/MIF 1 115 IPR014347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1041 Ssu-Chr3 24445366 24446545 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1041 K07253 - gmx:100305839 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1041 3 24445366 24446545 Ssu3g1041 3 24445366 24446545 ECH
Ssu3g1041 3 24445366 24446545 Ssu4g2438 4 60995717 60998430 PCT