Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1031 ATGGAACCTACCGCAGGCAAGCCCGGTTCTCTCCGGAACATTCTGATACGGTTTCTCCTCTTCGGCGTTTTGGTCATCGGCGTTCGTTTCGCTTACCTCGTCGCCGTCGCCGGCGAGTCCTGCAACCTCGGCGACTTCTGCTTCTTCTCCCTGCCGGAGACTCTCAGCCTCGTCATCTCCGGCGCCGGTCCTCTCGCCGTCGAGTCTGCTTCCGGCGGCGGTTCGGAGCTTTATACCAGCAAGGACTGGATCAACGGCGTTCGGTTCTACTCATCGGCGTTCCAGAACCTGGTCGCCGGCGGTTACCTCTCCCCGGAGTCGAAGGCTCTGTGCGTGGAGACGCCGACCGGCCGCGACGTCTTCGCGCTGAGGGAGATCGGCGTCAAAGACGCCGTCGGAATCGCGCGGAAAGCGGCGAAGCCGCTGGTGAAGTTCGGCCGCGGCGACCGCATTCCGTTCGGCGACGGAACCTTCGATTTCGTGTTTTCCGGCGAGGACTCGTTCGTGCGGTCGGCTAAGCCGGCGGAGTTCGCGGCGGAGATCGGCCGGACGCTTAAACCGGGAGGGTTCGCGGTGTTCCATTTTGCAAACCCTAAAGATACGTATAGTTTCAATTCGTTCCTCGATTTGTTCAATTGTTTCAGAGTAGTGAGGTTGCATGGCTTAGAAGGTTTTGATTCTAATATGCCTTATATACgtgaaattgttttgaaaaaagagTGTGGTGATGGTGCTGGTAAATTTGATGCTGTTGATGATTCAAGTGGAAAGTGTTATGTTCCTGGTTATAAGCATAATTTGGTTAAGATTGCTGAGCCTTTGATTGCGGAGGAGCCGTTGAAGCCTTGGATTACTTTGAAAAGGAATGTGAGGAACATAAAGTACCTTCCTTCGATGGTTGATATAAGCTTTAAGAATAggtatttgtatgttgatgtTGGAGCTAGAAGCTATGGCTCTAGCATAGGCTCTTGGTTTAGGAAGCAGTATCCTAAGCAGAACAAGACCTTTCATGTGTATGCGATTGAAGCTGATAAGACTTTTCATCAGGAGTATGGGTTGAAGAAGGGGGTTACTTTGGTTCCTTATGCCGCGTGGGTGAAGAATGAGACCTTGACGTTCGAGATTCATCGCGATCCTGGGGAGCAGGTTGAGGTTAAGGGCAGGGGGATGGGTAGGATTCGACCTTTGCAGTCGTCGGGGGAGGGGGATTTTGATGGCGAAGTGGAGAAGATTCGGGGATTCGATTTTGCTGAGTGGTTGAAGAAGACGGTTACCAAGAATGATTTTGTGGTGATGAAGATGGATGTGGAGGGTActgaatttgatttgattccgAGGTTGTTTAAGACTGGGGCTATATGTTTGATAGATGAGATTTTCCTTGAATGTCATTACAATAGGTGGCAGAGATGTTGCCCTGGGCAGAGGAGTTCAAAGTATGAGAAAACGTATGATCAATGCTTGCAGCTCTTAAATTCTCTTAGACAAAGTGGAATTCTTGTTCATCAGTGGTGGTAA 1521 0.4898 MEPTAGKPGSLRNILIRFLLFGVLVIGVRFAYLVAVAGESCNLGDFCFFSLPETLSLVISGAGPLAVESASGGGSELYTSKDWINGVRFYSSAFQNLVAGGYLSPESKALCVETPTGRDVFALREIGVKDAVGIARKAAKPLVKFGRGDRIPFGDGTFDFVFSGEDSFVRSAKPAEFAAEIGRTLKPGGFAVFHFANPKDTYSFNSFLDLFNCFRVVRLHGLEGFDSNMPYIREIVLKKECGDGAGKFDAVDDSSGKCYVPGYKHNLVKIAEPLIAEEPLKPWITLKRNVRNIKYLPSMVDISFKNRYLYVDVGARSYGSSIGSWFRKQYPKQNKTFHVYAIEADKTFHQEYGLKKGVTLVPYAAWVKNETLTFEIHRDPGEQVEVKGRGMGRIRPLQSSGEGDFDGEVEKIRGFDFAEWLKKTVTKNDFVVMKMDVEGTEFDLIPRLFKTGAICLIDEIFLECHYNRWQRCCPGQRSSKYEKTYDQCLQLLNSLRQSGILVHQWW 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1031 506 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 295 465 IPR029063 -
Ssu3g1031 506 PANTHER METHYLTRANSFERASE 54 506 - -
Ssu3g1031 506 PANTHER METHYLTRANSFERASE DOMAIN PROTEIN 54 506 - -
Ssu3g1031 506 Pfam Methyltransferase domain 143 193 IPR013216 GO:0008168
Ssu3g1031 506 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 100 218 IPR029063 -
Ssu3g1031 506 Pfam Methyltransferase FkbM domain 312 486 IPR006342 -
Ssu3g1031 506 Gene3D Vaccinia Virus protein VP39 294 478 IPR029063 -
Ssu3g1031 506 Gene3D Vaccinia Virus protein VP39 116 240 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1031 Ssu-Chr3 24175276 24176796 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1031 - - gmx:102670512 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1031 3 24175276 24176796 Ssu3g1031 3 24175276 24176796 ECH
Ssu3g1031 3 24175276 24176796 Ssu4g2450 4 61519402 61520223 PCT