Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0937 ATGGAGAGATTTGGAGTACGCATTATTTCTTTGATCCTTCTTTTGATGCTTACTAAAAGTTTAAGTTCCAATGCATTTGGTGGCAGTATGAAGGATGAGGAAGCACTCAAGGAAGGacaaaatgaaatggaaaattCTATCTCAAATTATTGTGAAATGGGGGTAATGGAAGATGATGATTGGCAGATGGTGCAGAAGAAGGGAAAGCAATTTGTGGTGAATGACAAACCTTTCTATGTTAATGGATTCAACACATATTGGCTGATGGTATTTGCTGCAGATGAGTCCACCAGAGGAAAAGTCACTGAGGTGTTCAAACAAGCATCCTCAGTGGGTATGACAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAGTGGCGGGCCCTACAGAAATCCCCATCAGTTTATGATGAAGAAGTCTTCAAGGCCCTGGACTTTGTTGTAAGTGAAGCAAAGAAATACAAGATCAGGCTTATATTATCATTGGCCAACAACTGGGAGGCATATGGAGGCAAAGCACAATATGTGAAATGGGGCAATGCTGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTCTCACATCCAACTCTTAGAAGCTACTACAAGGCCCATACTGTGCTCAATAGAGTTAACACATTCACAAACCTCACTTACAAGGAAGATCCAACAATTTTCGCTTGGGAATTGATGAATGAGCCTCGATGCACCTCAGATCCCACGGGTGACAAGTTACAGGATTGGATACAAGAAATGGCATTCCATGTCAAGAAAATTGATCCAAAACACCTAGTGGAGGTTGGACTAGAAGGATTTTATGGCCCATCAACACCACAGAGAGCTCAGTTCAATCCCAATTCATATGCTACACAGGTTGGAACTGATTTTATCCGGAACCACCTGGCTCTGGGTGTGGACTTTGCTTCTGTTCACATATATGCTGACTCTTGGATTTCACAACAAATTGCCGATACTCATCTCCCATTTATAAAATCATGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCAGTTGTTTTTGCTGAGTTTGGTGTATCTTCCAAAGACCCTGGCTACAATTCATCTTATAGAGACACACTTATAAGCACTGTGTACAGTACCATCCTAAACTCTACAAAGAAAGGAGGGAGTGGGGCTGGAAGccttttgtggcaattttttccTGATGGAACCGATAACATGGATGATGGGTATGCAATTGTTCTCTCAAAATCTCCTTCCACCTCAAGCATTATAAAACTTCAATCTACTAGGCTTGCACTGTTCAATTCCATGTGCACCACCAAATGCAATTGGggttgtaagaagaaaaaattgttggaGGAAATACTCTATCATGACGAACTGTAA 1383 0.4027 MERFGVRIISLILLLMLTKSLSSNAFGGSMKDEEALKEGQNEMENSISNYCEMGVMEDDDWQMVQKKGKQFVVNDKPFYVNGFNTYWLMVFAADESTRGKVTEVFKQASSVGMTVCRTWAFNDGQWRALQKSPSVYDEEVFKALDFVVSEAKKYKIRLILSLANNWEAYGGKAQYVKWGNAAGLNLTSDDDFFSHPTLRSYYKAHTVLNRVNTFTNLTYKEDPTIFAWELMNEPRCTSDPTGDKLQDWIQEMAFHVKKIDPKHLVEVGLEGFYGPSTPQRAQFNPNSYATQVGTDFIRNHLALGVDFASVHIYADSWISQQIADTHLPFIKSWMEAHIEDAEKYLGMPVVFAEFGVSSKDPGYNSSYRDTLISTVYSTILNSTKKGGSGAGSLLWQFFPDGTDNMDDGYAIVLSKSPSTSSIIKLQSTRLALFNSMCTTKCNWGCKKKKLLEEILYHDEL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0937 460 Pfam Cellulase (glycosyl hydrolase family 5) 74 372 IPR001547 GO:0004553|GO:0071704
Ssu3g0937 460 PANTHER - 8 460 IPR045053 GO:0004553
Ssu3g0937 460 SUPERFAMILY (Trans)glycosidases 64 423 IPR017853 -
Ssu3g0937 460 Gene3D Glycosidases 61 433 - -
Ssu3g0937 460 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 8 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0937 Ssu-Chr3 22310528 22313092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0937 58 460 Glycoside Hydrolase AT5G01930 72.236 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0937 K19355 - gmx:100811794 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0937 3 22310528 22313092 Ssu3g0937 3 22310528 22313092 ECH
Ssu3g0937 3 22310528 22313092 Ssu2g0915 2 46061341 46063619 PCT