Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0915 ATGGAAACACATAATAGATTTGGATTGCGTATTATTTCCTTGGTCATTTTTCTGACTCTTACTAAAAGTTTAAGCTCAACTGCATTTGGTGTCAGTGAATATGAAGATTGGGAAAGCGTTGATATAGCcgattttatcttaaattatgGaaGTGAAATGGGAGTCTTGGAAGAAAATGAATGGCAGATGGTGCAAAGAAAAGGAAACCAGTTTGTGGTGAACGACCAACCCTTTTATGTTAATGGATTCAACACGTACTGGTTGATGGTATTTGCTGCAGATGAGTCCACCAGAGGAAAGGTCACTGAGGTGTTCAAACATGCATCCTCTGTGGGAATGTCAGTTTGTAGGACTTGGGCATTCAATGATGGCCAATGGCGTGCTCTTCAGAAATCTCCATCAGTTTATGATGAAGATGTATTCAAGGCCTTGGATTTTGTGGTAAGCGAAGCAAAGAAATACAAAATCAGGCTCATATTATCACTGGTTAACAACTGGGAGGCATATGGTGGCAAAGCACAGTATGTGAAGTGGGGCAAGGAAGCTGGCCTTAACTTGACTTCCGATGATGACTTTTTTTCACATCCAACTCTCAGAAGCTACTACAAGGCTCATACGGTGCTCAATAGGGTTAATACATTCACAAATATCACTTACAAGGAAGATCCAACAATTTTTGCTTGGGAATTGATGAATGAGCCTCGATGCAACTCAGACTCCTCGGGTGATGTGTTACAGGATTGGATAAAAGAAATGGCATTCTATGTGAAGAGCATTGATCCAAAACACCTAGTGGAGATTGGACTGGAAGGATTTTATGGCCCCTCGACACCTCAGAGATATCAGTTCAACCCAAATTCATATGCTCAACAGGTTGGAACTGATTTTATCAGGAACCACCAGGTTCTAGGTGTTGACTTCGCTTCTGTTCACATATATCCAGACTCTTGCCCACATAGAGATGCTGAAAAGTATCTTGGAATGCCCGTTGTTTTTGCTGAGTTTGGTGTATCTGCAAAATCTCCTGGCTACAATTCAACATATAGAGACAACCTTATAAACACTGTGTACAAGACCATCCTAAACTCTACAAAGAAAGGAGGTAGTGGGGCTGGAAGCCTTGTGTGGCAGCTCTTTCCTGATGGAACGGACTACATGGACGATGGATATGCAATTGTTCTCTCAAAATCACCTTCCACATCAAGCATTATATCCCTTCAATCCACAAGGCTAGCCCTCTTCAATTCATTGTGCTCTAAGAAATGCCGTTGGGGTTGTAAGAAGAGAAATATGTTGGAAAAAGTACTATATCGCGACGAACTTTAA 1326 0.4095 METHNRFGLRIISLVIFLTLTKSLSSTAFGVSEYEDWESVDIADFILNYGSEMGVLEENEWQMVQRKGNQFVVNDQPFYVNGFNTYWLMVFAADESTRGKVTEVFKHASSVGMSVCRTWAFNDGQWRALQKSPSVYDEDVFKALDFVVSEAKKYKIRLILSLVNNWEAYGGKAQYVKWGKEAGLNLTSDDDFFSHPTLRSYYKAHTVLNRVNTFTNITYKEDPTIFAWELMNEPRCNSDSSGDVLQDWIKEMAFYVKSIDPKHLVEIGLEGFYGPSTPQRYQFNPNSYAQQVGTDFIRNHQVLGVDFASVHIYPDSCPHRDAEKYLGMPVVFAEFGVSAKSPGYNSTYRDNLINTVYKTILNSTKKGGSGAGSLVWQLFPDGTDYMDDGYAIVLSKSPSTSSIISLQSTRLALFNSLCSKKCRWGCKKRNMLEKVLYRDEL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0915 441 Gene3D Glycosidases 61 414 - -
Ssu2g0915 441 PANTHER - 12 316 IPR045053 GO:0004553
Ssu2g0915 441 SUPERFAMILY (Trans)glycosidases 64 400 IPR017853 -
Ssu2g0915 441 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 12 316 - -
Ssu2g0915 441 Pfam Cellulase (glycosyl hydrolase family 5) 75 354 IPR001547 GO:0004553|GO:0071704
Ssu2g0915 441 PANTHER - 320 441 IPR045053 GO:0004553
Ssu2g0915 441 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 320 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0915 Ssu-Chr2 46061341 46063619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0915 58 441 Glycoside Hydrolase AT5G01930 71.499 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0915 K19355 - gmx:100801139 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0937 3 22310528 22313092 Ssu2g0915 2 46061341 46063619 PCT