Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0934 atggGGAATTGTGTGGCTAAGTCTCAAGCCAAGGATAATGATTCTGATCAGAATGTGGAGTTTGCTACTGGGAATGTGAAACTCATTACCACCGAAGAATCTTGGAACCAAAGTTTGGAAGAAGCAAGGAAGGATGGCAAAATTGTAATTGCGAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGGTGATTGCGCCATATTACTGCGAGTTATCTGAGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGAACTAACTGACTTCAGCACTTCATGGGACATCAAAGCCACACCaactttcttctttcttaaagATGGACAACAAGTGGACAAACTTGTAGGAGCCAACAAGCCAGAGCTGCAGAAGAAGATTGTTGCCATTAGTGATTCAGTTCCCGAATACAATTAG 417 0.3957 MGNCVAKSQAKDNDSDQNVEFATGNVKLITTEESWNQSLEEARKDGKIVIANFSATWCGPCKVIAPYYCELSEKYTSMMFLLVDVDELTDFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKIVAISDSVPEYN 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0934 138 PRINTS Thioredoxin family signature 49 57 - -
Ssu3g0934 138 PRINTS Thioredoxin family signature 96 107 - -
Ssu3g0934 138 PRINTS Thioredoxin family signature 57 66 - -
Ssu3g0934 138 PANTHER THIOREDOXIN 1 136 - -
Ssu3g0934 138 Pfam Thioredoxin 29 127 IPR013766 -
Ssu3g0934 138 SUPERFAMILY Thioredoxin-like 21 128 IPR036249 -
Ssu3g0934 138 PANTHER THIOREDOXIN H9 1 136 - -
Ssu3g0934 138 ProSitePatterns Thioredoxin family active site. 50 68 IPR017937 -
Ssu3g0934 138 Gene3D Glutaredoxin 1 137 - -
Ssu3g0934 138 CDD TRX_family 37 127 - -
Ssu3g0934 138 ProSiteProfiles Thioredoxin domain profile. 8 132 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0934 Ssu-Chr3 22272949 22275924 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0934 K03671 - gmx:100813401 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0934 3 22272949 22275924 Ssu3g0934 3 22272949 22275924 ECH
Ssu3g0934 3 22272949 22275924 Ssu2g0921 2 46106782 46110630 PCT