Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0859 ATGGATTGCTTTGATCCAACAAGTAACAAGGGCAAGAGCAAGGTAAAGGCTGATGAGGCAAGGTGTTCTCATTTGAGGAAGCCACAAATTCTCCTTGCTGCTTGTGGAAGTGTTGGTGCGGTATATTGTGATAAGCATGAATGGCAGATTTGGAATGGGATAGGTGATCCTGTGCTTCACATTGAGCTTTGTAGATGGGCTGATATCATGGTCATTGCTCCACTGTCAGCAAATACTCTTGGCAAGATAGCAGGAGGGTTATGTGACAATTTGCTGACATGCATTGTGCGAGCATAG 297 0.4478 MDCFDPTSNKGKSKVKADEARCSHLRKPQILLAACGSVGAVYCDKHEWQIWNGIGDPVLHIELCRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRA 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0859 98 Pfam Flavoprotein 54 98 IPR003382 GO:0003824
Ssu3g0859 98 PANTHER BNAA01G27100D PROTEIN 41 98 - -
Ssu3g0859 98 SUPERFAMILY Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 24 98 IPR036551 GO:0003824
Ssu3g0859 98 Gene3D - 39 98 IPR036551 GO:0003824
Ssu3g0859 98 PANTHER HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY 41 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0859 Ssu-Chr3 20870575 20871833 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0859 K01598 - gmx:100782568 134.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2647 4 67388051 67389232 Ssu3g0859 3 20870575 20871833 PCT