Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0770 ATGACAGAGCCAAAACTAAGGTATGCTGTTGTTACTGGGGCAAACAAAGGGATAGGATTGGAGACTGTTAACCAGTTGGCCTCAAATGGAGTCAAGGTGGTGCTCACTGCCAGAGATGAGAGCAGAGGACTTGAAGCCATTGAGAGATTGAAAGTGTGTGGTCTCTCTGAGTTGGTGATTTTTCACCAGCTTGATGTGACTGATTCTGATAGTATTGCTTCACTAGTAGAGTTTGTCAAGACACAATTTGGGAGACTTGATATCTTGGTGAACAATGCAGGAATCAGTGGTGTCAACCCGTATGAAATGGAAGCATCAACAATGAACTGGAAGGAACTGCCTCAAACTTATGAGATGGCAGAGAAGTGCCTAACAACAAACTACTATGGTGCAAAGGAAACAACTGAGGCCTTTCTTCCCCTTCTGCAATTATCCCAGTCTCCTAGGATTGTTAATGTTTCCTCCCAAGCAGGGTTGCTAAAGAGGATAGCAAACGAGTTGGCTAAAGGGGTGCTTGATGATGCTGAAAATCTTACAGAAGAGAGAATAGATGAGGTACTCAAAGAGTTTATCAAAGACTTCAAAGAAGGTTCACTTGAAAACAAAGGTTGGCCAACCTTCTTGTCAGCCTATATGGTCTCAAAAGCAGCCATGAATTCTTACACAAGGATTCTAGCCAAGAAGCATCCAAACTTTTGCATTAATTGTGTGTGTCCTGGTTTTGTCAACACAGACATAAACAGAAACACTGGCATCTTATCCGTTGACCAAGGTGCTGCTAGTGTCGTGAGATTAGCACTGCTGCCTAATGATTCCCCTTCTGGCCTCTTCTATAGTAGGCAAGAACTGACAAActtttga 861 0.4274 MTEPKLRYAVVTGANKGIGLETVNQLASNGVKVVLTARDESRGLEAIERLKVCGLSELVIFHQLDVTDSDSIASLVEFVKTQFGRLDILVNNAGISGVNPYEMEASTMNWKELPQTYEMAEKCLTTNYYGAKETTEAFLPLLQLSQSPRIVNVSSQAGLLKRIANELAKGVLDDAENLTEERIDEVLKEFIKDFKEGSLENKGWPTFLSAYMVSKAAMNSYTRILAKKHPNFCINCVCPGFVNTDINRNTGILSVDQGAASVVRLALLPNDSPSGLFYSRQELTNF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0770 286 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Ssu3g0770 286 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Ssu3g0770 286 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Ssu3g0770 286 PRINTS Glucose/ribitol dehydrogenase family signature 211 230 IPR002347 -
Ssu3g0770 286 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Ssu3g0770 286 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 272 IPR036291 -
Ssu3g0770 286 Pfam short chain dehydrogenase 8 162 IPR002347 -
Ssu3g0770 286 CDD carb_red_PTCR-like_SDR_c 7 286 IPR045313 GO:0016616
Ssu3g0770 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Ssu3g0770 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Ssu3g0770 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 230 IPR002347 -
Ssu3g0770 286 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 4 286 - -
Ssu3g0770 286 Gene3D - 3 286 - -
Ssu3g0770 286 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0770 Ssu-Chr3 18359768 18362847 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0770 9 246 Miscellaneous Gene Families AT2G29150 28.631 3.17e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0770 K15095 - gmx:100778451 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0770 3 18359768 18362847 Ssu3g0770 3 18359768 18362847 ECH
Ssu3g0770 3 18359768 18362847 Ssu4g2744 4 70189593 70199548 PCT
Ssu4g2743 4 70181382 70183731 Ssu3g0770 3 18359768 18362847 PCT