Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0576 ATGGCACAGGTTAAAACTGTATTTATTGATTCACTACCTCCTTCATGGGATGAAGATTATGTCCGGGATCTTCTTAAGAAATATGGagagattgaaaaaattgagcTTGCTAGGAACATGCCGGCTGCTCGGAGGAAGAATTATGGATTTGTTACATTTAGTACACATGCTGCTGCTGTGGAATGTGCTGATAGCATTTCTGGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCACGGCCTCTTTCAAAACCTCTTCAGAGAAGCCGTGGGAAACATGTTAATCATGGGGACTTCCGTTCTGGCCGCAGTTCTGGAAGATTGGTAAGGTCTTCATGGAGTCGACCTGCACCACGTAGTCTTCCTACCCGTGTGGTGAGAGGAGTTGGAAGTCGTGTGCCGCCAGTTAGACCAGTTAGTGTGAGAAGTAGACGTCCCATCACATCCATGCTAGAGAGAGCCAGGCCAGTGGCTCCTCGAGCTAGAACCTATGACAGGAGATTGGCTGCTCCTGCATATCCAAAAAGTGGCATTAAAAGAGATTATAGTCGACGTGAGGATCTACCACCTCCGAGAAATAGAGTTGCTGCAGATTATGGCTCTAGGGTAGCCTCTCAGAGGCACGCATCTTATAGGGATTATCCTCCCCGTGGCTCTGACTACCCTGAGCTGCATAGAAGTACATCTCGTGCTGCACCAAAGAGAGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAggcctcctcctcctcctccgccCCCCCATCTAAGTTACCGTGAAGGACGTCCCCGTGATTTTGACACTCTATCTGGTTCAAAACGTCCTTATACTGCTATAGATGATGTTCCTCCACAGTATGATACTGGTGCTCGCCAATCAAGATCTCGTTTAGACTATGACTATGGAGGTAGTGGTTCACTGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTCTTGGATATAGTGGCAGCAGAAATTCTATTTCTAATCAAGACTTACATGGGACATATGGCAGTCGACAAGGCATGAGTTATGGCGGAGGTTCctttggtggtggtgatggtggtatGTACTCATCAAGTTATGGTGGTGATTACGTGTCCCGTGGAAGTGATGTTGGTGGCCGTTCATATTCATCCATGTATTCTGGTAGAGGTGTAGGAGGTAGCAGCAGTTATATGGCTGGTGGTGGATCTGGGTCTTATTATTGA 1242 0.4404 MAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNYGFVTFSTHAAAVECADSISGAGLGEGDKKAKVRARLSRPLSKPLQRSRGKHVNHGDFRSGRSSGRLVRSSWSRPAPRSLPTRVVRGVGSRVPPVRPVSVRSRRPITSMLERARPVAPRARTYDRRLAAPAYPKSGIKRDYSRREDLPPPRNRVAADYGSRVASQRHASYRDYPPRGSDYPELHRSTSRAAPKRGYVDDGYGQRFERPPPPPPPPHLSYREGRPRDFDTLSGSKRPYTAIDDVPPQYDTGARQSRSRLDYDYGGSGSLYGDAYGDRLGRSSLGYSGSRNSISNQDLHGTYGSRQGMSYGGGSFGGGDGGMYSSSYGGDYVSRGSDVGGRSYSSMYSGRGVGGSSSYMAGGGSGSYY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0576 413 Gene3D - 1 118 IPR012677 -
Ssu3g0576 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 87 IPR000504 GO:0003723
Ssu3g0576 413 MobiDBLite consensus disorder prediction 224 239 - -
Ssu3g0576 413 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 413 - -
Ssu3g0576 413 SMART rrm1_1 6 81 IPR000504 GO:0003723
Ssu3g0576 413 MobiDBLite consensus disorder prediction 388 413 - -
Ssu3g0576 413 PANTHER RNA RECOGNITION MOTIF 1 413 - -
Ssu3g0576 413 MobiDBLite consensus disorder prediction 71 127 - -
Ssu3g0576 413 MobiDBLite consensus disorder prediction 184 198 - -
Ssu3g0576 413 SUPERFAMILY RNA-binding domain, RBD 3 112 IPR035979 GO:0003676
Ssu3g0576 413 MobiDBLite consensus disorder prediction 158 305 - -
Ssu3g0576 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 69 IPR000504 GO:0003723
Ssu3g0576 413 CDD RRM_SF 7 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0576 Ssu-Chr3 14384256 14386484 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0576 - - gmx:100811387 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0798 2 41630548 41632220 Ssu3g0576 3 14384256 14386484 PCT