Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0798 ATGCCAGCTGCCCGTAGGAAGGACTATGGGTTTGTTACATTTGGCACACATGATGCTGCCGTTAAATGTGCTGAAAGCATTACGGGCACAGAGTTGGGTGAAGGTGACAAGAAGGCAAAAGTTAGAGCAAGGTTGTCAAGACCGCTTCAGAGAGGCCGTGGAAAACACGTTATTCGTGGGGACTACCGTTCTGGTCGCGGATCTGGAATGATGACGAGGCCTTCATGGAGCCGACCTGCACCTCGTAGTTTTCCTCCTCGTGGTGTAAGAGGAATTGGAAGTCGTGCTCCCCCAGTCAGACCAGTTAGCGTGAGAGATAGACGTCCTATCATGTCCATACCAGCAAGAAGTAGGCCGGCGCCTCCTCCATCAAGATCTTATGATAGGAGACCAGTTGCTCCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGGTCGGCGTGAGGATATACCACCTCCAAGAAGTAGAGTTGCTACAGATTATGGCTCAAGGGTGGCTTCTGAAAGACGACCATCTTACAGGGATTATGCTGCCCGTGGTCCTGGCTACACTGAGCTCCCAAGAAGTGCATCTCGTACTGCACCAAGGAGAGGCTATGTGGATGATGGATATGGACAAAGATTTGAGAGGCCTCCTCCTCCACCTCCTCCCCCCCATCTAAGTTACCGTGAAGGACGTCCCCGAGATTATGATGCTCTTTCTGGCTCAAAACGTTCTTATGCTGCTATTgATGATGTTCCTCCACGATATGCGGATACTGGTGCTCGCCAATCAAGAGCTCGATTAGACTATGACTATGGCAGCAGTGCTTCACAGTATGGTGATGCTTATGGTGATAGACTTGGAAGATCTAGTCTGGGatatggtggtggcagcagaaGTTCTATTTCTAGCCAAGATTCACATGGGATGTATAGCAGTCGACAGGGCATGAGTTATGGAGGAGGTTCTTTTGGTGGTGGTGATGTTGGTGGCATGTACTCATCAAGTTATGGTGGTGATTACATTTCTCGCGGAAGTGATGTTGGTGGCAGCTCATATTCATCCGTGTATTCTGGTAGGGGTGTGGGTGGTGGTAGCGGTTATATGGGTGGTGGTGGATCAGGATCTTATTATTGA 1122 0.4831 MPAARRKDYGFVTFGTHDAAVKCAESITGTELGEGDKKAKVRARLSRPLQRGRGKHVIRGDYRSGRGSGMMTRPSWSRPAPRSFPPRGVRGIGSRAPPVRPVSVRDRRPIMSIPARSRPAPPPSRSYDRRPVAPAYPKSSMKRDYGRREDIPPPRSRVATDYGSRVASERRPSYRDYAARGPGYTELPRSASRTAPRRGYVDDGYGQRFERPPPPPPPPHLSYREGRPRDYDALSGSKRSYAAIDDVPPRYADTGARQSRARLDYDYGSSASQYGDAYGDRLGRSSLGYGGGSRSSISSQDSHGMYSSRQGMSYGGGSFGGGDVGGMYSSSYGGDYISRGSDVGGSSYSSVYSGRGVGGGSGYMGGGGSGSYY 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0798 373 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 373 - -
Ssu2g0798 373 PANTHER RNA RECOGNITION MOTIF 1 373 - -
Ssu2g0798 373 MobiDBLite consensus disorder prediction 141 155 - -
Ssu2g0798 373 Gene3D - 2 73 IPR012677 -
Ssu2g0798 373 SUPERFAMILY RNA-binding domain, RBD 6 69 IPR035979 GO:0003676
Ssu2g0798 373 MobiDBLite consensus disorder prediction 289 309 - -
Ssu2g0798 373 MobiDBLite consensus disorder prediction 47 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0798 Ssu-Chr2 41630548 41632220 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0798 - - gmx:100779340 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0798 2 41630548 41632220 Ssu2g0798 2 41630548 41632220 ECH
Ssu2g0798 2 41630548 41632220 Ssu3g0576 3 14384256 14386484 PCT