Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0566 ATGTACACCTCGTGTGGGTCATTGGAGGATGCGCAGAAACTGTTTGATGGATTGCCCTGTGAGAGTGTGTACCCATGGAACGCTTTGCTCAGAGGGACTGTGGTTTCGGGGAAGAGACGGTACACTGATGTGCTTAAGACTTATGCCGAGATGAGGGCGTTGGGGGTTGAGTTGAATGTGTACAGTTTCTCCAATGTGATCAAGAGTTTTGCTGGAGCGTCGGCGTTTTCGCAAGGCTTGAAGACTCACGCGGTTTTGATCAAGAATGGATTGGCTGATAACTACATTCTCAGGACTGGTTTGATTGATATGTACTTCAAGTGTGGGAAGGTTAGGCTCGCGTGCCGCGTGTTTGAGGAAATTCCCGAGAGGGATGTTGTCGCTTGGGGGGCGATGCTTGCCGGGTTCGCACACAATAGGCTGCGGAGGGAGGTGTTGGAGTATGTGAGGTGGATGGTGGAGGAGGGAGTGAGGCCGAATTCGGTTGTGATGACGATTGTTATTCCTGTGATTGGGGAGGTTTGTGCAAGGAGGGTGGGTCAGGAGTTTCATGCTTATGTGGTGAAGACGAAATCGTACTCTAAGCAGGTGCCGGTGCAGTCTGCTTTGATTGATATGTATTGCAAGTGTGGGGATATGAGTTCAGCGAGACGGGTTTTTTATGGGTCGATGGAGAGGAATGTGGTTTGTTGGACGGCTCTGATGGCGGGGTACGCTTCAAATGGAAAACTAGAGCAGGCACTGAGGTCCACAATTTGGATGCAGCAAGAAGGGTGCAGGCCTGATGTGGTGACACTTGCCACTGTTCTTCCTGTTTGTGCACAGTTGAGGGCTTTGAAACAAGGGAAGCAGATTCATGCTTATGCTCTGAAACATTGGTTTCTGCCTAATGTATCTATAACTTCTTCGTTGATGATGATGTACTCCAAGTGTGGTGTTGTTGAGTATTCTAGAAGATCATTTGATAATATGGAACAAAGGAATGTGATTTCATGGACAGCCATGATTGATTCATATATTGAAAATGGGTATCTGTGTGAAGCACTTGGTGTGATAAGGTCTATGCAATTGTCAAAGCACAGGCCTGACTCTGTTACTATAGCAAGGATGTTGAGTGTTTGTGGTGAACTAAAACTTGTAAAGCTTGGGAAGGAGATTCATGGGCAGATGTTGAAAAGGGACTTTACATCAGTCCATTTTGTTTCTGCAGAACTTATCAATATGTATGGTTTATTTGGTGATATTGATAAGGCTAATTTGGTGTTTAATGCAGTTCCTGTTAAAGGTTCTATGACATGGACTGCTCTTATAAGGGCCTATGGATATAATGAATTGTATCAAGATGCAATTAACCTGTTTGATCAGATGAGATCTTCTCCAACCAATTTCACTTTTGAAGCCATTCTATCTATATGTGACAGAGCTGGATTGGTTGATGATGCTTGTAGAATCTTCAATTTAATGCCTAGATATAAAATTGAAGCATCTAAGGAACACTTTGCTATTATGGTGCGACTACTTACCCACAATGGTCAACTAGAGAAAGCTCAGAGATTTGAACAAATGAGTTCTTTCTTGTAG 1581 0.4415 MYTSCGSLEDAQKLFDGLPCESVYPWNALLRGTVVSGKRRYTDVLKTYAEMRALGVELNVYSFSNVIKSFAGASAFSQGLKTHAVLIKNGLADNYILRTGLIDMYFKCGKVRLACRVFEEIPERDVVAWGAMLAGFAHNRLRREVLEYVRWMVEEGVRPNSVVMTIVIPVIGEVCARRVGQEFHAYVVKTKSYSKQVPVQSALIDMYCKCGDMSSARRVFYGSMERNVVCWTALMAGYASNGKLEQALRSTIWMQQEGCRPDVVTLATVLPVCAQLRALKQGKQIHAYALKHWFLPNVSITSSLMMMYSKCGVVEYSRRSFDNMEQRNVISWTAMIDSYIENGYLCEALGVIRSMQLSKHRPDSVTIARMLSVCGELKLVKLGKEIHGQMLKRDFTSVHFVSAELINMYGLFGDIDKANLVFNAVPVKGSMTWTALIRAYGYNELYQDAINLFDQMRSSPTNFTFEAILSICDRAGLVDDACRIFNLMPRYKIEASKEHFAIMVRLLTHNGQLEKAQRFEQMSSFL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0566 526 Pfam PPR repeat 330 356 IPR002885 -
Ssu3g0566 526 Pfam PPR repeat 432 458 IPR002885 -
Ssu3g0566 526 Pfam PPR repeat 100 125 IPR002885 -
Ssu3g0566 526 Pfam PPR repeat 201 221 IPR002885 -
Ssu3g0566 526 Pfam PPR repeat family 226 273 IPR002885 -
Ssu3g0566 526 Gene3D Tetratricopeptide repeat domain 1 75 IPR011990 GO:0005515
Ssu3g0566 526 Gene3D Tetratricopeptide repeat domain 247 400 IPR011990 GO:0005515
Ssu3g0566 526 Gene3D Tetratricopeptide repeat domain 401 524 IPR011990 GO:0005515
Ssu3g0566 526 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 519 - -
Ssu3g0566 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Ssu3g0566 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Ssu3g0566 526 TIGRFAM PPR: pentatricopeptide repeat domain 201 228 IPR002885 -
Ssu3g0566 526 TIGRFAM PPR: pentatricopeptide repeat domain 330 364 IPR002885 -
Ssu3g0566 526 TIGRFAM PPR: pentatricopeptide repeat domain 432 458 IPR002885 -
Ssu3g0566 526 TIGRFAM PPR: pentatricopeptide repeat domain 100 127 IPR002885 -
Ssu3g0566 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Ssu3g0566 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 459 IPR002885 -
Ssu3g0566 526 Gene3D Tetratricopeptide repeat domain 76 199 IPR011990 GO:0005515
Ssu3g0566 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Ssu3g0566 526 PANTHER OS07G0578800 PROTEIN-RELATED 1 519 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0566 Ssu-Chr3 14296225 14297805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0566 1 519 Glycoside Hydrolase AT3G49170 27.017 2.29e-57 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0566 - - gmx:100809249 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0802 2 41754673 41755914 Ssu3g0566 3 14296225 14297805 PCT