Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0535 ATGGCAACTATGAACCCATTTGATTTGTTGGGCGACGATGCTGAGGACCCTTCTCAGCTCATCGCAGCCGAGCAACTTAAGGCGGCTGCCGCGGCGGCGACGGCGGCTCCCAAGAAGGCGCCAGCTCAGCAGCGCGGCGGTCAGCCCAACCAGGGAAAGCCGGCTCAGCTGCCCACCAAGCCGCCTCCTCCGGCTCAGGCCGTGAGGGAGGCCAGAAGTGAGCCAGCTCGCGGAGGCCGTGGAGGTGGACGAGGTGGTGGACGTGGATATGGGCGTGGTCGCGGGTTTGGTCGTGACTCTTCCAATGATGAGAACTCATTCCCTGCCACTGGAGCCCCTTATAATCAGGGTTCTTTTGAAGAAGGAGATGCTGGGAAGTCTTCTGAAAGACGCAGTTATGGTGGACCGCGAGGTCCTTACCGTGGCGGTCGTCGTGGAGGTTTCAGCAATGGTGAAACTGGTGAGGGTGAAGAAGGACGACCTCGAAGAGCATTTGATCGTCGCAGTGGGACTGGAAGAGGAAATGAATTCAAACGCGAAGGTGCTGGACGTGGTAACTGGGGAACACAAACTGATGAAATTGCTCAGGCAACTGATGAAGTCGCTAATGAAACAGAAAAGAATTTGGGTGATGAGAAGCCTGCAGTTGAAGATGTTGCTGATGGAAACAAGGACAGTCCTGCTAATGAAACTGAAGAAAAAGAGCCTGAAGATAAGGAAATGACTCTTGAGGAATATGAGAAAGTGTTGGAAGAGAGAAGGAAGGCCTTCCAAGCACTCAAGACTGAAGAGAGAAAGGTAGATATTAAAGAGTTTGAATCCATGCAGCCCTTGTCAAGCAAGAAAGACAATCGTGACATATTCATTAAACTGGGATCTGATAAAGATAAGCGAAAAGATGCTTTTGAGAAGGAAGAAAAATCCAAGAAGtcTGTCAGCATCACTGAGTTTCTGAAGCCTGGTGAGGGGGAAACATCCTATAACCCAGGTGGGCGTGGTAGGGGACGTGGCCGTGGTTCCCGGGGCGGTTACCGTGGAAATGCCATCAGCAATGCACCTGCTCCATCCATTGAAGATACTGTGCATTTCCCAACCTTGGGTGCCAAGCCGGACCTAGCCATTGTGGACGCATGGTGCTTCCTAGTGGCTAGGGCCAGTGCACGTGGAAATCAGAATTTCCTAAGGAGGTTCAGAATAGAGGCAACAACCATTCAATCACCAATTCACGCCTTCAACAGTTCAACGCTTTACCTTCAACTTTTCCATTACGCAAGAACCTGTGTATTGCTTTTCCTATTGCGTGTCCTCACGGTGGAGCTTGAGTTCGGTGAGGAGAAAGTCAAAGGCCACGACGTCGTGACGCGACGATGA 1371 0.5157 MATMNPFDLLGDDAEDPSQLIAAEQLKAAAAAATAAPKKAPAQQRGGQPNQGKPAQLPTKPPPPAQAVREARSEPARGGRGGGRGGGRGYGRGRGFGRDSSNDENSFPATGAPYNQGSFEEGDAGKSSERRSYGGPRGPYRGGRRGGFSNGETGEGEEGRPRRAFDRRSGTGRGNEFKREGAGRGNWGTQTDEIAQATDEVANETEKNLGDEKPAVEDVADGNKDSPANETEEKEPEDKEMTLEEYEKVLEERRKAFQALKTEERKVDIKEFESMQPLSSKKDNRDIFIKLGSDKDKRKDAFEKEEKSKKSVSITEFLKPGEGETSYNPGGRGRGRGRGSRGGYRGNAISNAPAPSIEDTVHFPTLGAKPDLAIVDAWCFLVARASARGNQNFLRRFRIEATTIQSPIHAFNSSTLYLQLFHYARTCVLLFLLRVLTVELEFGEEKVKGHDVVTRR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0535 456 MobiDBLite consensus disorder prediction 155 180 - -
Ssu3g0535 456 Coils Coil 243 266 - -
Ssu3g0535 456 MobiDBLite consensus disorder prediction 27 242 - -
Ssu3g0535 456 Gene3D - 159 271 - -
Ssu3g0535 456 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 369 IPR039764 GO:0003723
Ssu3g0535 456 Pfam Hyaluronan / mRNA binding family 161 267 IPR006861 -
Ssu3g0535 456 MobiDBLite consensus disorder prediction 312 351 - -
Ssu3g0535 456 PANTHER NUCLEAR RNA-BINDING-LIKE PROTEIN 1 369 - -
Ssu3g0535 456 MobiDBLite consensus disorder prediction 204 242 - -
Ssu3g0535 456 SMART HABP4_PAI_RBP1_2 161 268 IPR006861 -
Ssu3g0535 456 MobiDBLite consensus disorder prediction 189 203 - -
Ssu3g0535 456 Pfam Stm1 1 82 IPR019084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0535 Ssu-Chr3 13316119 13323043 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0535 K13199 - gmx:100814825 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0535 3 13316119 13323043 Ssu3g0535 3 13316119 13323043 ECH
Ssu2g0835 2 43204546 43208653 Ssu3g0535 3 13316119 13323043 PCT