Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0835 ATGGCCACTGCGAATCCCTTTGATTTGTTGGGCGATGACGTCGAGGACCCGTCGCAGCTGATCGCGGCGGAGCAGCTGAAAGccgcggcggcggcggcggcgccGAAGAAGGACCAGGCTAAGCCCGGAGCTCGCGGCGGCGCGGCGGCTCAGCAGAGCAAGCCAGCTCAGCTGCCTTCCAAGCCGCTCCCTCCCACTCAGGCTGTGAGGGAGGCAAAAACTGAAGCTTCCCGCGGCAGTCGTGGAGGTGGCCGAGGAGGTGGACGTGGATATGGACGCGGTCGTGGTGGCAGTGGCTTTGGCCGTGATTTTTCCAATGATGAGAACTCATCAGCCCCTGCTAACCAAGGTGCTTTTGAAGAAGGAGACACTGGGAATCCCTCAGAAAGACGTGGTTATAGTGGACCTCGCGGGCCTTatcgtggtggtggtggtcgTGGCCGTCGTGGGGGTTTTAGCAACGGTGAAGTTGGTGAAGATGGACGCCCAAGAAGAACTTTTGAACGCCACAGTGGGACCGGACGAGGAAATGAATTCAAACGTGATGGTGCTGGACGTGGGAACTGGGGTACAGAGTCTGATGAAATTGCTCAGGTGACTGAAGAAGTGGTGAATGAAACTGAAAAGAATTTGGGTGATGAGAAGCCTGCAGGCGAGGAAGATGCAGCAGAGGGAAACAAGGACAGTCCTGctaatgaaaatgaagaaaaggagCCAGAGGATAAGGAGATGACACTGGAAGAGTATGAGAAAGTGCTGGAAGAGAGAAGGAAGGCCCTGCAGGCGCTCAAGACTGGAGCAAGAAAGGTGGATATCAAGGAGTTTGCATCCATGCAGCCACTGTCAAACAAGAAAGACAATGATGAGATCTTTATTAAATTGGGATCTGACAAAGATAAGCGCAAAGATGCTTTGGAGAAGGAGGAGAAATCCAAAAAGTCTGTCAACATCAATGAGTTTCTGAAGCCTGCTGAAGGGGAGAGGTACTATAACCCTGGTGGGCGTGGTCGGGGACGTGGCCGTGGTTCTAGAGGTTACAGCGGAAATGCAGGCAGCAATGTACCAGCTCCATCAATTGAGGATCCTGGGCAATTCCCAACCTTGGGTGGCAAGTGA 1116 0.5036 MATANPFDLLGDDVEDPSQLIAAEQLKAAAAAAAPKKDQAKPGARGGAAAQQSKPAQLPSKPLPPTQAVREAKTEASRGSRGGGRGGGRGYGRGRGGSGFGRDFSNDENSSAPANQGAFEEGDTGNPSERRGYSGPRGPYRGGGGRGRRGGFSNGEVGEDGRPRRTFERHSGTGRGNEFKRDGAGRGNWGTESDEIAQVTEEVVNETEKNLGDEKPAGEEDAAEGNKDSPANENEEKEPEDKEMTLEEYEKVLEERRKALQALKTGARKVDIKEFASMQPLSNKKDNDEIFIKLGSDKDKRKDALEKEEKSKKSVNINEFLKPAEGERYYNPGGRGRGRGRGSRGYSGNAGSNVPAPSIEDPGQFPTLGGK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0835 371 Coils Coil 246 266 - -
Ssu2g0835 371 MobiDBLite consensus disorder prediction 32 250 - -
Ssu2g0835 371 PANTHER NUCLEAR RNA-BINDING-LIKE PROTEIN 1 371 - -
Ssu2g0835 371 SMART HABP4_PAI_RBP1_2 163 271 IPR006861 -
Ssu2g0835 371 Pfam Stm1 1 83 IPR019084 -
Ssu2g0835 371 MobiDBLite consensus disorder prediction 262 371 - -
Ssu2g0835 371 MobiDBLite consensus disorder prediction 286 316 - -
Ssu2g0835 371 MobiDBLite consensus disorder prediction 103 117 - -
Ssu2g0835 371 MobiDBLite consensus disorder prediction 153 188 - -
Ssu2g0835 371 Pfam Hyaluronan / mRNA binding family 163 269 IPR006861 -
Ssu2g0835 371 MobiDBLite consensus disorder prediction 206 250 - -
Ssu2g0835 371 Gene3D - 161 274 - -
Ssu2g0835 371 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 371 IPR039764 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0835 Ssu-Chr2 43204546 43208653 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0835 K13199 - gmx:100805110 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0835 2 43204546 43208653 Ssu2g0835 2 43204546 43208653 ECH
Ssu2g0835 2 43204546 43208653 Ssu3g0535 3 13316119 13323043 PCT