Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0533 ATGAGGCTTACAATAAAAACACCACACCCACTCCCTTCAACTCAAACCTACACCCTCCTCAAACCGCGCTGCATAACCGTGACCCAACCATCAAaacccaccaccaccaacaacgtACACCTCTCTAGTGACACGCGACAAGCCGCATTACAtttagaaaaaatgataaacttCGAATACCATAATAACATTTTTCCGTCCGTGCAATCATTATCACCACCGTCGTCGTTGATATCATTATCGTCATCGGGCCAAAAAGCCGAGAAACTTGGAAAGAGGTGGAAGGAGTACCAAGGCATGAACAATTGGGACGGTTTGCTAGACCCATTAGACGACAATCTACGTGGTGAAATCCTACGGTATGGTCATTTCGTGGAAGCTGCGTACAAATCCTTCGAGTTTGACCCTTCCTCTCCCAACTACGCAAACTGTAGGTTCCCCAAAAGCACTCTTTTCGAACGGTGTGGTTCACCTAACACGGGTTACAAGGTAACGAAACACCTACGTGCGACCTCGGGGATCCGGTTACCCAGTTGGGTGGACAAAGCACCGAGCTGGGTAGCAACACAATCAAGCTATGTGGGATACGTAGCGGTGTGTGACAACAAGGAAGAGATCAAAAGGCTGGGTCGGCGCGACATCGTTGTCGCATATAGAGGAACCACCACATGCTTGGAATGGCTCGAGAATTTTCGTGCCACTCTCACCAACCTCCCCATGCCATGCAGCACGAAAAGAGCCTTTGAAAAAAACGGTGTCAAGGACGAAAGTGGGGCCATGGCGGAAAGCGGATTCTTGAGTCTTTACACCTCGTCACTTCCTGCAAATCTGTCGCTGCAGGAAATGATAAGGCAAGAGGTCTCAAGGATCCTCCGTACTTACAAGGGAGAACCCTTGAGTCTGACAGTCACCGGCCACAGTCTAGGGGCGGCATTGGCCACGCTCACGGCCTATGATGCCAAAACCGCCTTTCCCAGACTGCCGGTGACGGTCATCTCTTTCGGCGGGCCCCGCGTCGGGGACCCGAGATTCCGGCTGCAGCTTGAGAGGCAAGGGACCAAGGTTTTGCGCATAGTGAACTCCGACGATGTCATCACCAAGGTTCCAGGTTTTgtgtttgatgatgatgatgtggtGGACGGTAGAGGTGTCCACGTGGCGGGCTTTCCGAGCTGGATACAGAAGAGGGTGGAGGAGGCACAGTGGGTGTACGCCGAGGTTGGGAGGGAACTACGGTTATGTAGCAGGGATTCTCCGTACCTAGGAAACAGGAATGTCGCCACGTGTCACGAGCTGAACACGTATCTGCACCTCGTTGACGGCTTTGTCAGCTCCGCGTGTCCCTTCAGAGCCTCCGCGAAGAGGTTCCTCCGGCGATAA 1380 0.5051 MRLTIKTPHPLPSTQTYTLLKPRCITVTQPSKPTTTNNVHLSSDTRQAALHLEKMINFEYHNNIFPSVQSLSPPSSLISLSSSGQKAEKLGKRWKEYQGMNNWDGLLDPLDDNLRGEILRYGHFVEAAYKSFEFDPSSPNYANCRFPKSTLFERCGSPNTGYKVTKHLRATSGIRLPSWVDKAPSWVATQSSYVGYVAVCDNKEEIKRLGRRDIVVAYRGTTTCLEWLENFRATLTNLPMPCSTKRAFEKNGVKDESGAMAESGFLSLYTSSLPANLSLQEMIRQEVSRILRTYKGEPLSLTVTGHSLGAALATLTAYDAKTAFPRLPVTVISFGGPRVGDPRFRLQLERQGTKVLRIVNSDDVITKVPGFVFDDDDVVDGRGVHVAGFPSWIQKRVEEAQWVYAEVGRELRLCSRDSPYLGNRNVATCHELNTYLHLVDGFVSSACPFRASAKRFLRR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0533 459 PANTHER PHOSPHOLIPASE A(1) DAD1, CHLOROPLASTIC 51 458 - -
Ssu3g0533 459 Gene3D alpha/beta hydrolase 93 458 IPR029058 -
Ssu3g0533 459 SUPERFAMILY alpha/beta-Hydrolases 115 378 IPR029058 -
Ssu3g0533 459 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 51 458 - -
Ssu3g0533 459 CDD Lipase_3 189 370 - -
Ssu3g0533 459 Pfam Lipase (class 3) 215 371 IPR002921 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0533 Ssu-Chr3 13207521 13208900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0533 89 459 Acyl Lipid Metabolism Gene Families AT2G44810 67.473 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0533 K16818 - gmx:100800549 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0533 3 13207521 13208900 Ssu3g0533 3 13207521 13208900 ECH
Ssu2g0839 2 43376314 43377654 Ssu3g0533 3 13207521 13208900 PCT