Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0839 ATGAAACCTCTATACCCCGCTCAAACTCTACTCCCTACTTCAACAACAATCTACAACGTAAAACCACGGTGCATAACCGTCATTAACCAACCATCGAAACCGCACAAATTAAAACAGCCACATAATATTGGACCAAGAATAGAGAAAACCATAAATAACTTAGAAAACCATAATTtgttatcatcatcattgtcaccATCATTGTCATGGAGATCAAACAAACTTGGAAAGAGATGGATGGAGTACCAAGGTATGAACAATTGGGAAGGTTTGCTTGACCCATTGGACAACAATTTACGTGCCGAAATTCTTAGGTATGGTCAATTTGTGGAGGCTGCTTATAAGTCCTTTGAGTTCGACCCTTCCTCCCCCTCCTATGGCTCTTGCAAGTTCCCAAAGAGCACACTTTTGGACAAGTGTGGTTTGCCAAACACAGGGTACAAGGTAACCAAACACCTCCATGCAACCTCGAGTATTCAGCTACCTCGTTGGGTGGACAAGGCACCAACTTGGGTTTCGACCCAATCGAGCTACATTGGCTATGTAGCGGTGTGTGACGACAAGGAAGAAATCAAAAGACTAGGTCGTAGAGACATTGTTATTGCATATAGAGGAACAGCCACATGCTTGGAATGGCTTGAGAATTTGCGTGTCACTCTCACCCACCTCCCCATGCCATGCAAAAGATTGAGAAACTTTTACAAGGAGCAAACTGCACCCCCCATGGTTGAAAGTGGATTCTTGAGTCTCTACACCTCACCATGCAATTGGGAAGCCTCTATGGTGAGCCTTCAACACACGGTGCGCCGAGAGATAGGCCAGATCCTCCAAACCTATGGCGGGGAACCGTTAAGTCTAACGGTCACCGGCCATAGTCTTGGGGCGGCGTTGGCTGCTCTCACAGCGCACGATATCAAAGCCACCTTTGTCTGGTTGCCGATATCGACCGTCGTATCATTCGGCGGTCCTCGCATCGGCAACCAGAGTTTCAGGCAGAGCCTAGAAAAACAAGGGACAAAGGTTTTACGTATAGTAAACTCGGATGATGTTGTCACCAAAGTGCCAGGGTTTGTGTTCCATAATGATGATGGCCACCTGGCGAGAAAGCACGGTGTCCACGTGGCAGGAGTACACAGCTGGGTCAAGAAGATGATGGAGAAAGAAGAGTGGGGGTACGCGGAGGTTGGGGAGGAGCTTCGCCTTTGTAGTAGGGATTCGCCATACCTTAGTAGCATCGATGTCGTCGCGTGTCATGAGTTGAACACTTATCTCCACCTTGTTGATGGCTTCGTCAGCTCCAAATGTCCCTTCAAAGCCACTGCAAAGAGGTTTCTCCGGTAA 1341 0.4698 MKPLYPAQTLLPTSTTIYNVKPRCITVINQPSKPHKLKQPHNIGPRIEKTINNLENHNLLSSSLSPSLSWRSNKLGKRWMEYQGMNNWEGLLDPLDNNLRAEILRYGQFVEAAYKSFEFDPSSPSYGSCKFPKSTLLDKCGLPNTGYKVTKHLHATSSIQLPRWVDKAPTWVSTQSSYIGYVAVCDDKEEIKRLGRRDIVIAYRGTATCLEWLENLRVTLTHLPMPCKRLRNFYKEQTAPPMVESGFLSLYTSPCNWEASMVSLQHTVRREIGQILQTYGGEPLSLTVTGHSLGAALAALTAHDIKATFVWLPISTVVSFGGPRIGNQSFRQSLEKQGTKVLRIVNSDDVVTKVPGFVFHNDDGHLARKHGVHVAGVHSWVKKMMEKEEWGYAEVGEELRLCSRDSPYLSSIDVVACHELNTYLHLVDGFVSSKCPFKATAKRFLR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0839 446 CDD Lipase_3 155 364 - -
Ssu2g0839 446 SUPERFAMILY alpha/beta-Hydrolases 102 358 IPR029058 -
Ssu2g0839 446 PANTHER PHOSPHOLIPASE A(1) DAD1, CHLOROPLASTIC 51 445 - -
Ssu2g0839 446 Pfam Lipase (class 3) 200 357 IPR002921 GO:0006629
Ssu2g0839 446 Gene3D alpha/beta hydrolase 78 445 IPR029058 -
Ssu2g0839 446 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 51 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0839 Ssu-Chr2 43376314 43377654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0839 1 445 Acyl Lipid Metabolism Gene Families AT2G44810 57.174 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0839 K16818 - gmx:100800549 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0839 2 43376314 43377654 Ssu2g0839 2 43376314 43377654 ECH
Ssu2g0839 2 43376314 43377654 Ssu3g0533 3 13207521 13208900 PCT