Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0530 ATGGGCTGCGCGGGGTCGAAGCTGGATAACGAGGACACGGTGCGGCGGTGCAAGGACCGGCGGCGCCTGATGACGGAGGCGGTGTACGCGAGGCACCACCTGGCCGCAGCCCACTCCGACTACTGCCGCTCCCTCCGCCGCACGGGCTCCGCCCTCTCCACCTTCGCCGCCGGCGAACCCCTCTCGGTCTCCGACAACACCCCCGCCGTCTTCCTCAGCTCCCAACAACCCGCCACGCCACAACACCATCAAAATCCCCCCTCCCCCTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTCCGGCGCCGCCGCAGCCGCCGAAGCTGGCCCCCGCCCAACAACACCAGCACCACCGCCGCCGCCGCAGCGGCAAACCGAAACTCCCCCACATCCTCTCCGACACCAGCCCCTCCTCCACCCCGAGAAGCCACGTGTCCAACTTCTTCCCGACCGCACGCTCCACCTACTCCTCCACCCCTTCCCAAACCTCCTCCGTTTGGAACTGGGAAAATTTCTACCCCCCTCCGCCCCCTCCCGCTTCCGATTATTTCCCCGAAGAAGAACCCCAACGACAAACACCCTCTCATTTCTCTCGCACAACGCAAAACGCTAATCCCCAAGCGCACGACACCGACTTCGAGAGATCTGAATATGATTACTTCGACGGAAAAGTTGAAGCTCAAAAGAACGATTCTCACTCCGAGGGTGGTCGTCGTCATCATCTTCCGGAGGAGTATACCGAGACCGAGAGGGAGGAGGTTCAGTGTAGCGAGTATCACTATAGCGGTACGAGTTCCTCTGACGATGATGGTGTGGAGGGGGATGTGGAGTCGCGGTCCGGGATCGGGACCCGGTCGAATTTCGGGTCCTCGGTGCGGGCCGAGTCCGTGGCCGCCGCCGCCGCGCCCGCGCCGAAGGCCTTCCACGCGGCGTCCTCCGTCGCGGAGATGACGATGGTGGTCAGGCACCGGGACTTGACGGAGATCGTGGAGGCCATTAGGGAGAATTTCCACAACGCCGCTGCCGCCGGGGATCAGGTCTCCGAGATGCTTGAAATCAGCAAGGCGCAGCTCGATCGCAGCTTCAGACAATTGAGGAAAACTGTGTATCACTCGAGTAGTATATTGAGCAATTTGAGCTCGAGTTGGACCTCGAAACCGCCGCTGGCGGTTAAGTACCGGCTCGACACCGGTTCGCTGGAAGAACCGGGCGGTCCGAAGAGTCTTTGCTCCACTTTGGAACGGCTTTTGGCTTGGGAGAAGAAGCTCTACGAGGAGGTTAAGGCTAGAGAAGGTGTGAAGATTGCACATGAAAAGAAATTGTCAGCTCTGCAGACTCAGGAATacaaaggagaggaagaagctaaGATATTCAAAACCAAGGCTTCCATAAATAGGCTGCAGTCACTAATAATTGTTACATCTCAGGCTGTGTCTACCACCTCAACTGCCATTATTGGCCTTAGGGACTCTGATCTTGTCCCTCAGCTTGTTGATCTCTGCCATGGATTCACGTACATGTGGAGATCAATGCACCATTGCCATGAAATTCAAAGCAACATAGTGCAGCAAGTCCGCGGCCTTGTGAACAGATCATCAAGAGGTGACTCCACATCTGAGTTGCACAGGCAGGCAACTCGTGACCTTGAATCGGCCTGTCGCAACTTCATCCTGTCCTTGCATGGCTGGTTCAAGCTCAGCCTTCTTCCAGTCAACAATGATAACATCAACAACGGCAGGGAAGCCTCTGATACATACCACTTTTTTGATGAATGGAAACTCGCGCTTGACCGTGTCCCCGACACGGTTGCATCGGAAGCCATCAAGAGCTTTATCAATGTTGTCCATGTGATATCTTCCAAGCAAGCTGAAGAGCTCAAGATCAAAAAAAGAACCGAGACAGCTTCCAAGGAACTTGAGAAGAAGGCTTCCTCTCTGAGAAACCTAGAGAGGAAGTTCTACAACTCATTTTCTATGGTAGGCATTAGCCTTCCTGATTCTGCACCAGACAATGGACAAGGTCTGGATGCACGCGACCCACTTGCTGAGAAAAAACTAGAACTGGCAGCCTGCCAAAGGCGCGTTGAAGATGAAATGCTGAGGCATTCAAAAGCTGTGGAGGTAACAAGAGCCATGACCCTCAACAATTTGCAAACAGGCTTGCCTGGGGTGTTTCTGGCGTTGACCAGTTTCTCTTCCTTGTTCACTGAGGCTCTTGAATCAGTGTGTACCCGTTCATATGCCATCAATTAG 2250 0.5498 MGCAGSKLDNEDTVRRCKDRRRLMTEAVYARHHLAAAHSDYCRSLRRTGSALSTFAAGEPLSVSDNTPAVFLSSQQPATPQHHQNPPSPSPSPSPSPSPPAPPQPPKLAPAQQHQHHRRRRSGKPKLPHILSDTSPSSTPRSHVSNFFPTARSTYSSTPSQTSSVWNWENFYPPPPPPASDYFPEEEPQRQTPSHFSRTTQNANPQAHDTDFERSEYDYFDGKVEAQKNDSHSEGGRRHHLPEEYTETEREEVQCSEYHYSGTSSSDDDGVEGDVESRSGIGTRSNFGSSVRAESVAAAAAPAPKAFHAASSVAEMTMVVRHRDLTEIVEAIRENFHNAAAAGDQVSEMLEISKAQLDRSFRQLRKTVYHSSSILSNLSSSWTSKPPLAVKYRLDTGSLEEPGGPKSLCSTLERLLAWEKKLYEEVKAREGVKIAHEKKLSALQTQEYKGEEEAKIFKTKASINRLQSLIIVTSQAVSTTSTAIIGLRDSDLVPQLVDLCHGFTYMWRSMHHCHEIQSNIVQQVRGLVNRSSRGDSTSELHRQATRDLESACRNFILSLHGWFKLSLLPVNNDNINNGREASDTYHFFDEWKLALDRVPDTVASEAIKSFINVVHVISSKQAEELKIKKRTETASKELEKKASSLRNLERKFYNSFSMVGISLPDSAPDNGQGLDARDPLAEKKLELAACQRRVEDEMLRHSKAVEVTRAMTLNNLQTGLPGVFLALTSFSSLFTEALESVCTRSYAIN 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0530 749 MobiDBLite consensus disorder prediction 193 208 - -
Ssu3g0530 749 MobiDBLite consensus disorder prediction 75 211 - -
Ssu3g0530 749 Pfam Protein of unknown function (DUF632) 325 615 IPR006867 -
Ssu3g0530 749 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Ssu3g0530 749 MobiDBLite consensus disorder prediction 226 256 - -
Ssu3g0530 749 PANTHER BZIP DOMAIN CLASS TRANSCRIPTION FACTOR (DUF630 AND DUF632)-RELATED 1 748 - -
Ssu3g0530 749 MobiDBLite consensus disorder prediction 82 109 - -
Ssu3g0530 749 MobiDBLite consensus disorder prediction 226 288 - -
Ssu3g0530 749 PANTHER UNCHARACTERIZED 1 748 - -
Ssu3g0530 749 Coils Coil 628 651 - -
Ssu3g0530 749 MobiDBLite consensus disorder prediction 131 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0530 Ssu-Chr3 13056101 13061649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0530 1 59 Acyl Lipid Metabolism Gene Families AT2G27090 37.288 3.51e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0530 - - gmx:100815888 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0530 3 13056101 13061649 Ssu3g0530 3 13056101 13061649 ECH
Ssu2g0844 2 43533478 43534215 Ssu3g0530 3 13056101 13061649 PCT