Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2825 ATGTGCCAGTTATCATCATCTACCTCCACTAAGTGTGAAAGCAATGAGGGCCAGCCAAATAACATGCCCACAACCAAAATTCAGCAGCCTGACATGTTCGGCCTTTTGATCCCCAAATCCCCAACATTGGAACAAGACCAAAAGCCCCATAAAGGCCATTTCTCCCTGGCCCTCAACGAAGCGAAATGCATAGCGCACATAGCACTCCCCATGGTCTTAACCGGCCTGTTACTCTACTCTCGCTCCATAATCTCCATGCTGTTCCTCGGCCGCGTGGGCGAGCTTGCCTTAGCCGGCGGGTCCCTCGCCATTGGATTCGCCAACATCACAGGCTACTCCGTTCTCTCGGGCCTCGCCATGGGGATGGAGCCCATTTGCGGCCAGGCCTTTGGGGCCAAACGCTTCAAACTTCTGGGCCTCGCGATGCAGAGGACAGTGGTCCTGCTTCTCCTCACTTCGGTTTTCATATCATTCCTGTGGCTCAACATGAGGAAAATATTGCTCCTATGTGGCCAACAAGAGGACATCGCCGCCGAAGCCCAATCCTTCATACTTTACTCTCTCCCCGATCTCGTGGCGCAATCATTGCTACACCCTTTGCGAATCTACTTGCGAAGTCAATCCATAACCCTGCCTCTCACGTACGCCGCGTCTCTGTCTATTCTCCTTCACGTCCCCATCAACTACCTCCTTGTCTCTGTGCTCCAGCTTGGAATCAAAGGCATTGCCTTGGGCGCTGTTTGGACGAATTTCAATCTCGTCGTCTCGTTGATTCTCTACATCTGGGTCTCCCGCGTATACAAGAAGACATGGATCGGTGTTTCCTTCAAGGGTATCTTCAGCGGTTGGAAAGCGCTTCTCAATTTGGCCATTCCAAGTTGCGTCTCCGTTTGCCTTGAATGGTGGTGGTACGAAATCATGATTTTACTGTGCGGGTTATTGATTAATCCTCAGGCAACGGTTGCGTCCATGGGGGTTCTGATTCAAACCACTGCCCTGATATACATTTTCCCGTCTTCCCTAAGCTTTGGTGTTTCCACACGTGTTGGAAATGAACTGGGCGCGGAGAATCCCAAAAAGGCCAAACTCGCGGCACTCGTGGGGCTGTGTTTCAGTTACGTCTTGGGATTCTCGGCCCTGTTTTTTGCCATTTCGGTGAGGCACGTGTGGGCGTCCATGTTCACACGTGACGCGGAGATCATTGCCCTGACGTCGATGGTCTTGCCCATCATTGGGCTCTGCGAGCTTGGGAATTGTCCGCAAACGACGGTTTGCGGCGTCTTGAGGGGAACCGCGAGGCCCAAGCTGGGAGCCAATATAAATTTGGGTTGCTTCTACCTTGTGGGGATGCCCATTGCGGTGTGGTTGGGTTTCTTTGCGGGGTTTGACTTCAAAGGCTTGTGGCTCGGTCTGTTGGCGGCTCAAGCCTCTTGTATGGTCACCATGTTGTTCGTGTTGGCTCGCACCAACTGGGAGGGTCAGGTCCAAAGAGCCAAGGAACTCACGTCGTCTGATCCTACTGAAGAGGGAGATCACAAGGAGGAAATGGTGGTGGTTAAGGAGGAAGAACAAGATGAGAAATGCTCGTTTGGTTCATGCGCAACCAAGGAATGCTCAGATTCGATAGTTTGA 1632 0.5227 MCQLSSSTSTKCESNEGQPNNMPTTKIQQPDMFGLLIPKSPTLEQDQKPHKGHFSLALNEAKCIAHIALPMVLTGLLLYSRSIISMLFLGRVGELALAGGSLAIGFANITGYSVLSGLAMGMEPICGQAFGAKRFKLLGLAMQRTVVLLLLTSVFISFLWLNMRKILLLCGQQEDIAAEAQSFILYSLPDLVAQSLLHPLRIYLRSQSITLPLTYAASLSILLHVPINYLLVSVLQLGIKGIALGAVWTNFNLVVSLILYIWVSRVYKKTWIGVSFKGIFSGWKALLNLAIPSCVSVCLEWWWYEIMILLCGLLINPQATVASMGVLIQTTALIYIFPSSLSFGVSTRVGNELGAENPKKAKLAALVGLCFSYVLGFSALFFAISVRHVWASMFTRDAEIIALTSMVLPIIGLCELGNCPQTTVCGVLRGTARPKLGANINLGCFYLVGMPIAVWLGFFAGFDFKGLWLGLLAAQASCMVTMLFVLARTNWEGQVQRAKELTSSDPTEEGDHKEEMVVVKEEEQDEKCSFGSCATKECSDSIV 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2825 543 TIGRFAM matE: MATE efflux family protein 70 468 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu2g2825 543 Pfam MatE 292 455 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu2g2825 543 Pfam MatE 70 230 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu2g2825 543 PANTHER MULTIDRUG RESISTANCE PROTEIN 40 514 - -
Ssu2g2825 543 MobiDBLite consensus disorder prediction 1 26 - -
Ssu2g2825 543 CDD MATE_eukaryotic 60 497 IPR045069 GO:0042910|GO:1990961
Ssu2g2825 543 PANTHER PROTEIN DETOXIFICATION 40 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2825 Ssu-Chr2 89271977 89273608 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2825 K03327 - gmx:100811560 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2825 2 89271977 89273608 Ssu2g2825 2 89271977 89273608 ECH
Ssu7g0745 7 14983417 14984802 Ssu2g2825 2 89271977 89273608 ECH