Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2704 ATGATGCAGATCAGCACCAGCGTTTCAGCCCACAACCTTCACAAGTTTCAAGCAATAAGGTGCCCCAGCTTCAGCTTCAGATGCCAAGCCTCTTCCTCCGTCAAACAACCCCCAACCTTTCAGAAGCCCTTGATCTCCACCGAGTCAACTCGCTTGCACCTCGCCAACCTCGACAAACTCCTCGAGATCCAAAAGCCCGTGGTCCTAACCACCCAACTCCACCacccacaacaacaacaagcaATCATCAACGATTCgaaggaaaagaagggaagaagccTTCTGGAAGGACTTAACTTGGCGAGGCTGTGGCCGGAGATGAAAGCCACCGAGGAAATGTCCCCGCGCCACCTCAAACGCCTCCAAAGGTTACTATCAAAGACGGCGGAGTACTCCCCGAGGAACATCCTCGGCGGCCGGTGGAGGGAGTACCACGGCAGCAACGACTGGAAAGGGATGCTTGACCCCCTCGACGAGAATCTCCGGCGAGAGGTCGTCCGGTACGGCGAATTCGTGCAAGCGGCGTATCAAGCGTTTCATTCCGACCCCGCCATGTCAACGGAGGAGCCGCCACACCAACGCCACGTGGCGCTTCCCGAAAGATCCTACAGAATGACCAAAAGCCTCTACGCCACGTCATCCATCGGGTTGCCCAAATGGGTCGATGACGTGGCTCCGGATCTTGGATGGATGACCCAACGCTCCAGCTGGGTCGGATACGTCGCCGTTTGCGAGGACAGGAGAGAGATCGCACGGATGGGAAGAAGGGACATCGTGATCTCTCTCCGCGGAACTTCCACGTGTCTCGAGTGGGCCGAGAATCTCAGGGCCCATTTGGTCGACATGCCCGGAGATGAATCAGATAATAacgataacaacaacaatgattcAGAAGCCCAGGCCCAAGGAAAGCCTAAAGTGGAGTGCGGCTTCATGAGTTTGTACAAGACCAAAGGGGCGCACGTGCCGAGTCTGGCTGAGTCCGTGGTGGAGGAAGTGAAGCGGTTGATTGAAGTTTACAAAGGCGAAGAGTTGAGCATTACTGTGACGGGGCACAGTCTCGGCGCCACACTAGCCTTATTGGTGGCTGATGAGATAAGCACGTGCTGCCCCGAAGTGCCACCCGTGGCTGTTTTTTCCTTCGGTGGCCCTCGGGCTGGTAACAAGGCCTTCGGGGACCGCGTAACTTCGAAAAACGTGAAAGTGCTGAGAATAGTGAACTCGCAAGACGTGATTACTAGGGCTCCCGGGATCTTCGTGAGCGAAGAGCTTGAACAAAAAATACGGAACGTGGGTGGGGGTGTGTTGGAAGAGAACACGCCGTTGGCGTACTCGCACGTGGGGGCTGAGCTGCGCGTGCACACGAAGATGTCGCCGTACCTTAAGCCCGATGCTGACATGGCATGTTGCCATGACTTGGAGGCTTACTTGCACTTGGTGGATGGGTTCTTGGCGTCTAATTGTCCCTTCAGAGCGAACGCTAAGAGGAGCTTGGCCAGGTTAATGCAAGACCAAAGCTCCAATGTAAAGAGGTTGTATACTAGCAAGGCAAAAGCCTTAACTGTGAATCTTAGTAGGCAGGGATCCATGTCTATGTCTAATTGTTTGCCAAGTCCATCTTAA 1623 0.5274 MMQISTSVSAHNLHKFQAIRCPSFSFRCQASSSVKQPPTFQKPLISTESTRLHLANLDKLLEIQKPVVLTTQLHHPQQQQAIINDSKEKKGRSLLEGLNLARLWPEMKATEEMSPRHLKRLQRLLSKTAEYSPRNILGGRWREYHGSNDWKGMLDPLDENLRREVVRYGEFVQAAYQAFHSDPAMSTEEPPHQRHVALPERSYRMTKSLYATSSIGLPKWVDDVAPDLGWMTQRSSWVGYVAVCEDRREIARMGRRDIVISLRGTSTCLEWAENLRAHLVDMPGDESDNNDNNNNDSEAQAQGKPKVECGFMSLYKTKGAHVPSLAESVVEEVKRLIEVYKGEELSITVTGHSLGATLALLVADEISTCCPEVPPVAVFSFGGPRAGNKAFGDRVTSKNVKVLRIVNSQDVITRAPGIFVSEELEQKIRNVGGGVLEENTPLAYSHVGAELRVHTKMSPYLKPDADMACCHDLEAYLHLVDGFLASNCPFRANAKRSLARLMQDQSSNVKRLYTSKAKALTVNLSRQGSMSMSNCLPSPS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2704 540 Pfam Lipase (class 3) 259 418 IPR002921 GO:0006629
Ssu2g2704 540 CDD Lipase_3 161 481 - -
Ssu2g2704 540 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 2 526 - -
Ssu2g2704 540 Gene3D alpha/beta hydrolase 140 532 IPR029058 -
Ssu2g2704 540 MobiDBLite consensus disorder prediction 286 301 - -
Ssu2g2704 540 MobiDBLite consensus disorder prediction 282 303 - -
Ssu2g2704 540 PANTHER GLYCEROLIPASE A1 2 526 - -
Ssu2g2704 540 SUPERFAMILY alpha/beta-Hydrolases 162 483 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2704 Ssu-Chr2 87275193 87276815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2704 26 540 Acyl Lipid Metabolism Gene Families AT4G16820 58.935 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2704 - - gmx:100806573 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2704 2 87275193 87276815 Ssu7g0543 7 9939171 9944517 PCT