Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1778 ATGCAAGCCGTTTCGGTCTCACCTTTGTCGTCGAAGTTTAGAGATTCTGCCGACGAGTTCGCGGAGGCTTCTGGAAAGTTTGAACACGATTTCATGGCCAAACTCAAAATCGATGAACACAAAAACGAAAACGAAGAGAAGCACAACGAAGATGAggtagaagaagatgaagaagaagaagaagaagaggaagaggaagaggaagaagaggaattTAGCTTCGTGCTCGCGAATCCCGACGGTTCGCCGATCTCTGCCGACGACGCTTTCGACAACGGCCAGATTCGTCCGGTTTTTCCCATTTTCAACCAGGATCTGCTCTTCTCCGACGAATACGACCGCGGCGCCGGTGTCCGACCGCCGATAAAGGTCTTCGTCCAAGAGCCGGACAATTCTCCGTCGCAATCACCGTCGGAGGCGGCGGCGCCGGAGGGACCGTACTGCGAGTGGACTCCGAAGGCGGCGGTGAAGAGCAACTCGACGGGATTCTCGAAGCTGTGGAGGTTCCGCGACGTGAAGCTGCGGAGCAACAGCGACGGGAAGGACGCGTTTGTGTTCTTGAATCACGCGCCGCCGGCGAAGACGGAGAAGGCGAGAAACGTCGTTGTTAAGAATGTTGAGGCGAGGAAGGGGAAAACGACGGCGTCGTCGGCGCACGAGAAGCATTACGTGATGAACAGAGCGAGGAAAGAGAGCGATAAACGCAAGTCGTATTTGCCGTATAGGCAAGATCTGTTCGGGTTCTTCGCCAACGCCAACGGATTCAGCAGGAATGTTCATCCTTATTGA 789 0.5095 MQAVSVSPLSSKFRDSADEFAEASGKFEHDFMAKLKIDEHKNENEEKHNEDEVEEDEEEEEEEEEEEEEEEFSFVLANPDGSPISADDAFDNGQIRPVFPIFNQDLLFSDEYDRGAGVRPPIKVFVQEPDNSPSQSPSEAAAPEGPYCEWTPKAAVKSNSTGFSKLWRFRDVKLRSNSDGKDAFVFLNHAPPAKTEKARNVVVKNVEARKGKTTASSAHEKHYVMNRARKESDKRKSYLPYRQDLFGFFANANGFSRNVHPY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1778 262 Pfam Protein of unknown function (DUF1645) 86 240 IPR012442 -
Ssu2g1778 262 Coils Coil 37 73 - -
Ssu2g1778 262 MobiDBLite consensus disorder prediction 49 74 - -
Ssu2g1778 262 MobiDBLite consensus disorder prediction 36 90 - -
Ssu2g1778 262 PANTHER - 1 258 - -
Ssu2g1778 262 PANTHER DUF1645 FAMILY PROTEIN 1 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1778 Ssu-Chr2 68509674 68510462 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1778 - - ccaj:109801205 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1778 2 68509674 68510462 Ssu2g1778 2 68509674 68510462 ECH
Ssu2g1778 2 68509674 68510462 Ssu5g1074 5 33881457 33881831 PCT