Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3743 ATGTCCGACTCCGAAATCTCACACGCGCCCCAGTCGGAGCAAGACACCGCTCCGCCGCCGCAGCCCGCCCAAGACCAACCCCTTGCGACCGCCAAGCTCGGCCCCGCCGCCGTCTCCTTCAGCATATGGCCTCCAACTCAGCGCACCCGCGACGCCGTCATCAACCGCCTAATCGAAACCCTATCCAACCCCTCCGTCCTCTCCAAGCGCTATGGGACAATGCCCCCCGACGAGGCCTCCGCCGCCGCGCGCCAGATCGAGGACGAGGCCTTCGCCGTAGCCGGCGGCTCCTCCGCCTCCGACAACGACGGGATCGAGATCCTCCAGGTGTATTCCAAGGAGATCAGCAAGCGGATGCTCGACACCGTCAAGGCCAAAGCCACCGCAGGTTCCGCCGCCGTCGATAACGGCGTCGGAGAGACTCCTTCCTCCAAAGTTGCTCCTTCCGCCGCCCCGGAGGACGACTCTACCGTCGCCGAGTCCGAAACCTGA 492 0.6585 MSDSEISHAPQSEQDTAPPPQPAQDQPLATAKLGPAAVSFSIWPPTQRTRDAVINRLIETLSNPSVLSKRYGTMPPDEASAAARQIEDEAFAVAGGSSASDNDGIEILQVYSKEISKRMLDTVKAKATAGSAAVDNGVGETPSSKVAPSAAPEDDSTVAESET 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3743 163 Pfam WPP domain 39 131 IPR025265 -
Ssu1g3743 163 MobiDBLite consensus disorder prediction 128 163 - -
Ssu1g3743 163 MobiDBLite consensus disorder prediction 1 31 - -
Ssu1g3743 163 Gene3D WPP domain 39 134 IPR038214 -
Ssu1g3743 163 PANTHER WPP DOMAIN-CONTAINING PROTEIN 1-RELATED 1 154 - -
Ssu1g3743 163 PANTHER WPP DOMAIN-CONTAINING PROTEIN 1-RELATED 1 154 IPR044692 GO:0000278|GO:0048527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3743 Ssu-Chr1 93876675 93877166 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3743 - - gmx:100804911 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3743 1 93876675 93877166 Ssu1g3743 1 93876675 93877166 ECH
Ssu5g0295 5 6304084 6304476 Ssu1g3743 1 93876675 93877166 PCT