Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3080 ATGCAGTTGAACATTTACCACGCGCTTTTGCTTTTCTTTATGCCTATTTCTCCAGCTCTTCCACACTCACACCCCAACCTTTTATTGAAATCCTCAACTCCAATTTGCTTTGTACTCACTCATTCATTACGAAACCCTCTTCTTCTACTATTACTTCATCTTGTTCTATCTGTGAAGAGCATAATGGCCTCGAGAGTAGTGTTATTGTTGGCTATGTGTGTGCTTCCGGCGATGGTTGTGGCCATTCGCCCAGCCAAGAACCCTTTCTCCGTGAAGGGTCGCGTCTACTGTGACCCTTGCCGTGCTGGATTTGAGACCTCTGCAACTACCTACATTGCTGGTGCGGAGGTTATGTTGCAATGCAAGAGCAGGGTTAGCAACGAGGTTGTGTACACTAAGAAGGGGTGGACTGACTCAACAGGATCATACACAATGTATGTGGATGAGGATCACGCAGATGAGATCTGTGATGCCAAGCTTGTAAGCAGTCCTCACCCTGAATGTAAGGAAGTCACCCCAGGCCGTGACCAAGCCCGTGTTATTCTCACCCGCTACAATGGCATTGCCTCCGACAATAGGTTTGCCAATGCCATGGGCTTCATGTCACAGGAGGTTGCTTCTGGCTGTACTGAGATCCTCAGGCAATACCAGGAGTTCGATAATGAGAATTAA 672 0.4762 MQLNIYHALLLFFMPISPALPHSHPNLLLKSSTPICFVLTHSLRNPLLLLLLHLVLSVKSIMASRVVLLLAMCVLPAMVVAIRPAKNPFSVKGRVYCDPCRAGFETSATTYIAGAEVMLQCKSRVSNEVVYTKKGWTDSTGSYTMYVDEDHADEICDAKLVSSPHPECKEVTPGRDQARVILTRYNGIASDNRFANAMGFMSQEVASGCTEILRQYQEFDNEN 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3080 223 Pfam Pollen protein Ole e 1 like 91 172 - -
Ssu1g3080 223 PANTHER ALLERGEN-LIKE PROTEIN BRSN20 63 222 - -
Ssu1g3080 223 PANTHER PROTEIN DOWNSTREAM OF FLC-RELATED 63 222 IPR006041 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3080 Ssu-Chr1 80531546 80533010 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3080 - - gmx:100305566 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3080 1 80531546 80533010 Ssu1g3080 1 80531546 80533010 ECH
Ssu6g2411 6 56358173 56360797 Ssu1g3080 1 80531546 80533010 PCT