Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2563 ATGTCGAGTCTGGAGGCGGCACCGCACACGCTGACTCGGCGGCCGTCGAGGAGCGCCGCCACGACCTTCTCGACGGAGGTTTTCGACAACGACGTCGTCCCGTCCTCACTCGCCTCCATCTCGCCGATTCTCCGCGTGGCCAATGAGATCGAAAGCGAGCGCCCTAGGGTTGCCTATCTGTGTCGGTTCTATGCTTTCGAGAAGGCGCACCGGTTGGATCAGAGCTCCAGCGGACGCGGTGTGAGGCAGTTTAAGACGCTGTTGCTGCAGCGATTGGAGAGGGACAATGGACCCAGTCTTGCCGCTCGTGTTAAGAAGACAGATGCAAGGGAAATCCAAGCTTATTATCAGCAATACTATGAGCATTATGTCAGAGCTCTTGACCAAGGAGAGCAGGCAGACAGAGCACAGCTCGGGAAAGCTTACCAGACTGCTGGGGTGCTTTTTGAAGTGCTTTGTGCCGTTAACAAGACTGAGAAGGTCGAAGAAGTAGCTCCTGAGaTCATCGCGGCTGCTAGAGATGTCCAGGAAAAGACGGAGATATATGCACCTTTCAACATTCTTCCGTTGGACTCTGCTGGGGCTTCTCAGCCTATTATGCAGCTTGAAGAGATTAAGGCAGCTGTTTCTGCGCTCTGGAATACCCGTGGCCTGAATTGGCCAAGTTCATTTGAGCAACAAAGGCAGAGAACTGGAGATTTGGATCTGCTTGATTGGCTTAGAGCCATGTTTGGGTTCCAGAGGGACAACGTCAGGAACCAGAGAGAGCATTTGATTCTGCTTCTTGCTAACTCTCACATAAGGCTAAACCCCAAACCCGAGCCTCTTAACAAGCTTGATGATCGTGCCGTTAATGCAGTGATGAATGGTCTGTTTAAGAATTACAAAACGTGGTGCAAATTTTTGGGACGAAAACATAGTTTACgACTCCCTCAAGGTCAGCAAGAGATACAACAAAGGAAGTTACTTTATATGGGCTTGTATCTTCTCGTATGGGGTGAAGCATCCAATGTTCGCTTCATGCCAGAGTGTCTATGCTACATATTTCATAATATGGCATATGAACTTCATGGTTTATTGGCTGGAAACGTCAGCATTGTTACTGGTGAAAACATCAAACCTTCTTATGGTGGTGATGATGAGGCATTCTTGCGCAAGGTTATAACTCCCATATACCAAGTAATTGAAAAGGAAGCCGAGAAGAGCAAAAATGGAACAGCTCCTCATTCAGCCTGGTGCAACTATGATGATCTAAATGAGTATTTCTGGTCACCTGATTGCTTTTCTCTTGGATGGCCCATGCGTGATGATGGTGAATTTTTTAGATCAACATTTAATTTGACACAGGGAAGAAAGGGTGCTCAGAAAACATCTGGAAGAACTGGCAAATCAAATTTTGTTGAGACCCGGTCATTCTGGAACATCTTCCGCAGTTTTGATCGTCTTTGGACCTTCTATCTACTGGGTTTGCAGGCTATCATCGTTGGAGATTCACTGATGTGCTACGAAATATTCTCAAAGTCATTGTTAGTCTTTTTTGGGTTATTGCTCTTCCACTCTTCTACTGCACATTCCTTCAAGGGTGCCCCTGAGTTTACCAAGAATCTGCTTTCCTTTCTTCATCAAATAAAGGGGATTCCACCATACTATATGTTGGCAGTTGCAGTGTATCTGCTTCCAAATTTACTAGCAGctgttctctttcttttcccacTGCTCAGGCGTTGGATTGAAAACTCAGACTGGCACATAGTTAGACTTCTCTTATGGTGGTCACAGCCAAGAATCTATGTTGGAAGAGGAATGCATGAGAGTCAATTTGCTCTCCTAAAaTACACTCTTTTCTGGGTGATTCTTTTGGCTGCTAAATTTTCATTCAGCTTTTTTGTCCAGATCAAACCTCTAGTTAAGCCAACTAAGGACATAATGAGCATTCGGCATGTTGATTTTGGTTGGCATGAGTTTTTGCCCAATGCTCAACATAATTATGGTGCAGTTATTGCACTCTGGGCCCCTGTACTTATGGTTTATTTCATGGACACTCAAATTTGGTATGCCGTCTTCTCAACTATTTGCGGTGGTGTTATTGGTGCCTTTGATCGTCTAGGAGAGATACGCACCCTGACTATGCTAAGATCGCGGTTCCAGGCATTGCCTGGTGCATTCAACACATACTTGGTTCCTACTGACAAGAAGCAGAAAAAGAGATTCTGTTTCTCAAAGGGATTTGCCAAGATTTCCGCAAGCAGAAGGAGTGAAGCTGCTAAATTTGCTCAATTATGGAATGAAATTATTTGCAGTTTCCGTGAGGAAGATATCATAAGTGATAGGAAAGGCCTCAGAGATATACTCTTTAGTTGCTTTTTTTTGGAGATGGATCTTTTGATGGTTCCATACTCATCAGATCCTAGCTTGAAAATAATTCAGTGGCCACCTTTTCTGCTTGCAAGCAAGATTCCTGTAGCACTGGATATGGCAGCTCAATTTCGAGGAAGGGACTCTGATCTTTGGAAGCGCATATGTGCAGATGAATATATGAAGTGTGCTGTGATTGAATGctatgaatcttttaaaaatgtccTGCATGCTTTGGTAGTAGGAGAAGCTGAAAAAAGGACAATCTCTGTCATCATTAAGGAAGTTGAAAACAGCATCTCTCAGAATACACTTCTTACAAATTTCCGAATGGGGTTTTTGCCTTCCCTTTGTAAGAAGTTTGTGGAGCTTGTGGAAATCTTGGTGGATGCTTATTCATCCAAGCAAGGTACAGTGGTGGTCTTGTTGCAAGACatgttagaagtgtttacacgTGATATGATGGTAAATGAGATCAGGTTGGTTAATTTAACTGCACTGGATCTGGAATATAATAATTCTTCAGGCtcttccattaaaaataataatGACACTGGAAGGCAACTTTTTGCTGGTACAGATGCAAAACCGGCTGTACTATTCCCTCCAGTGGTTACAGCACAATGGGAGGAACAgATTAGACGTCTTTATTTACTTTTGACGGTGAAGGAATCTGCCATTGAGGTTCCAACAAACCTTGAAGCACGCAGAAGGATTGCATTCTTTACCAATTCATTGTTCATGGATATGCCACGTGCTCCACGAGTTCGTAAAATGCTGTCATTCAGTGTCCTAACTCCATACTACAGTGAAGAGACTGTCTATTCGAAGAATGACcttgagtttgaaaatgaagatGGTGTGTCAATCATATATTACCTGCAAAAGATCTTCCCTGATGAGTGGAATAACTTCATGGAACGACTTGATTGTAAGAAAGATAGTGAGATGTGGGAGAAAGATGAGAACATATTGCAGCTACGTCACTGGGCCTCGTTACGAGGACAAACTCTTAGCAGGACAGTTAGGGGAATGATGTACTACCGACGGGCTATTAAGCTTCAGGCTTTTCTTGATATGGCAAATGAAAAGGAGATACTTGATGGCTATAAAGCTATTACTGTCCCATCTGAGGAAGATAAAAAGAGCCATAGATCCTTGTATGCCAGTTTAGAGGCCATTGCTGACATGAAATTCACATACGTCGCTACCTGTCAGAACTATGGGAATCAGAAGCGTAGTGGAGATCGCCATGCAACAGACATCCTGAATTTGATGGTTAACAATCCCTCACTTCGTGTGGCTTATATTGATGAAGTCgaagaaagagaaggaggaaaagTACAGAAAGTTTATTATTCTGTACTGGTCAAAGCTGTGGACAATCTTGACCAAGAAATATTTCGAATAAAACTGCCTGGTCCAACAAAGTTAGGAGAAGGGAAGcctgaaaatcaaaatcatgcCATCATTTTTACAAGAGGCGAAGCTCTTCAGACTATTGACATGAACCAGGATAATTACTTGGAAGAAGCTTTAAAAATGCGCAACCTTTTGGAAGAGTTTAATGAAGATCATGGGGTGCGACGACCTACAATATTAGGTGTTCGTGAGCACATCTTTACTGGCAGTGTCTCTTCCTTGGCTTGGTTTATGTCAAATCAAGAAACAAGCTTTGTCACAATTGGTCAAAGAGTTCTTGCAAGACCCTTGAAGGTGCGATTCCACTATGGTCATCCCGATGTTTTTGATAGAATTTTCCACATGACTCGTGGAGGAATTAGCAAGGCTTCTCGTGGCATCAATCTGAGCGAGGATATTTTTGCTGGATTCAACTCAACACTAAGACGTGGAAATATTACTCATCACGAATATATCCAATGCGGAAAGGGTAGAGATGTTGGGCTCAATCAAATCTCACTTTTTGAAGCAAAAGTGGCTTGTGGTAATGGAGAGCAGACATTAAGCAGAGATATCTACAGGCTGGGGCATCGTTTTGACTTCTTCCGCATGCTATCATGTTATTTCACGACCATTGGATTTTATATAAGCTCAGTGATTGTGGCCCTCACATGTTATGTATTCCTATATGGCAAACTGTACCTGTCTTTGAGTGGATTTGAGGCTGCAATGGTAAAGTTGGCTAGGAGAAAGGGAGATGATGCACTAAAGGCAGCATTAGCTTCGCAATCCCTTGTTCAGATAGGACTTTTAATGACTTTGCCCATGTTCATGGAAATTGGACTAGAGAGAGGGTTCAGAAGTGCTATATGTGAACTCATAATAATGCAGTTGCAGCTAGCATCTGTTTTCTTCACTTTCTCACTAGGGACAAAACTGCACTATTTTGGGCGCACTCTTCTGCATGGAGGGGCAAAGTACAGAGCAACTGGGCGTGGTTTTGTTGTTCGCCATGAGAAGTTTGCTGAAAATTACAGGATGTACTCTAGGAGTCACTTTGTAAAAGGGATTGAACTCACAATGTTGCTCATATGTTATAAGATTTATGGAGCAGCAACACCTGATTCAACATCATATGGCCTTCTCTCATGGTCAATGTGGTTTTTGGTCTGTTCTTGGTTgttttctcctttccttttcaatCCATCAGGGTTTGAATGGCAGAAGATAGTTGAGGACTGGGATGATTGGCAAAAGTGGATAAGTAGTCGAGGTGGTATTGGTGTTCCTTCAAATAAGAGTTGGGAATCATGGTGGGATGAGGAACAGGAGCATCTGCAGTACACTGGGTTTTTGGGGCGGATATGTGAGGTTATTCTTGTCCTGCGTTTCTTTGTCTATCAATATGGAGTTGTGTATCATCTCAATGTAGCCAGAGGGGACAAGAGCATCTTGGTTTATGCTTTGTCCTGGATAGTGATAGTAGCTGTCATGGTTATCCTTAAGATTGTGTCCATGGGTAGAAAGCAGTTCAGCGCAGATTTCCAGTTGATGTTTCGTCTTCTCAAATTGTTTCTGTTCATTGGAGCCATTGTTGCTCTAGGCTTAATGTTTACTCTGCTGAGTCTCACAGTTGGAGACATCTTTGCAAGCCTCCTAGCCTTTTTGCCAACAGCATGGGCACTTATACAGATAGCACAAGCATGCAGGCCATTCGTGAAGGGCATTGGAATGTGGGGGTGTGTCAAAGCTTTAGCAAGGGGCTACGAATACTTGATGGGAGTGGTTATTTTTGCACCAGTGGCCATATTGGCTTGGTTCCCATTTGTTTCAGAATTCCAAACTAGGCTGCTGTTCAACCAAGCATTCAGCCGAGGGCTTCAAATCCAGCGCATTCTGGCTGGCGGCAAGAAGCATAAGTAG 5679 0.4235 MSSLEAAPHTLTRRPSRSAATTFSTEVFDNDVVPSSLASISPILRVANEIESERPRVAYLCRFYAFEKAHRLDQSSSGRGVRQFKTLLLQRLERDNGPSLAARVKKTDAREIQAYYQQYYEHYVRALDQGEQADRAQLGKAYQTAGVLFEVLCAVNKTEKVEEVAPEIIAAARDVQEKTEIYAPFNILPLDSAGASQPIMQLEEIKAAVSALWNTRGLNWPSSFEQQRQRTGDLDLLDWLRAMFGFQRDNVRNQREHLILLLANSHIRLNPKPEPLNKLDDRAVNAVMNGLFKNYKTWCKFLGRKHSLRLPQGQQEIQQRKLLYMGLYLLVWGEASNVRFMPECLCYIFHNMAYELHGLLAGNVSIVTGENIKPSYGGDDEAFLRKVITPIYQVIEKEAEKSKNGTAPHSAWCNYDDLNEYFWSPDCFSLGWPMRDDGEFFRSTFNLTQGRKGAQKTSGRTGKSNFVETRSFWNIFRSFDRLWTFYLLGLQAIIVGDSLMCYEIFSKSLLVFFGLLLFHSSTAHSFKGAPEFTKNLLSFLHQIKGIPPYYMLAVAVYLLPNLLAAVLFLFPLLRRWIENSDWHIVRLLLWWSQPRIYVGRGMHESQFALLKYTLFWVILLAAKFSFSFFVQIKPLVKPTKDIMSIRHVDFGWHEFLPNAQHNYGAVIALWAPVLMVYFMDTQIWYAVFSTICGGVIGAFDRLGEIRTLTMLRSRFQALPGAFNTYLVPTDKKQKKRFCFSKGFAKISASRRSEAAKFAQLWNEIICSFREEDIISDRKGLRDILFSCFFLEMDLLMVPYSSDPSLKIIQWPPFLLASKIPVALDMAAQFRGRDSDLWKRICADEYMKCAVIECYESFKNVLHALVVGEAEKRTISVIIKEVENSISQNTLLTNFRMGFLPSLCKKFVELVEILVDAYSSKQGTVVVLLQDMLEVFTRDMMVNEIRLVNLTALDLEYNNSSGSSIKNNNDTGRQLFAGTDAKPAVLFPPVVTAQWEEQIRRLYLLLTVKESAIEVPTNLEARRRIAFFTNSLFMDMPRAPRVRKMLSFSVLTPYYSEETVYSKNDLEFENEDGVSIIYYLQKIFPDEWNNFMERLDCKKDSEMWEKDENILQLRHWASLRGQTLSRTVRGMMYYRRAIKLQAFLDMANEKEILDGYKAITVPSEEDKKSHRSLYASLEAIADMKFTYVATCQNYGNQKRSGDRHATDILNLMVNNPSLRVAYIDEVEEREGGKVQKVYYSVLVKAVDNLDQEIFRIKLPGPTKLGEGKPENQNHAIIFTRGEALQTIDMNQDNYLEEALKMRNLLEEFNEDHGVRRPTILGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLARPLKVRFHYGHPDVFDRIFHMTRGGISKASRGINLSEDIFAGFNSTLRRGNITHHEYIQCGKGRDVGLNQISLFEAKVACGNGEQTLSRDIYRLGHRFDFFRMLSCYFTTIGFYISSVIVALTCYVFLYGKLYLSLSGFEAAMVKLARRKGDDALKAALASQSLVQIGLLMTLPMFMEIGLERGFRSAICELIIMQLQLASVFFTFSLGTKLHYFGRTLLHGGAKYRATGRGFVVRHEKFAENYRMYSRSHFVKGIELTMLLICYKIYGAATPDSTSYGLLSWSMWFLVCSWLFSPFLFNPSGFEWQKIVEDWDDWQKWISSRGGIGVPSNKSWESWWDEEQEHLQYTGFLGRICEVILVLRFFVYQYGVVYHLNVARGDKSILVYALSWIVIVAVMVILKIVSMGRKQFSADFQLMFRLLKLFLFIGAIVALGLMFTLLSLTVGDIFASLLAFLPTAWALIQIAQACRPFVKGIGMWGCVKALARGYEYLMGVVIFAPVAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKHK 1892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2563 1892 Gene3D - 25 187 IPR023175 -
Ssu1g2563 1892 SMART FKS1_dom1_2 319 435 IPR026899 -
Ssu1g2563 1892 Coils Coil 1290 1310 - -
Ssu1g2563 1892 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 321 432 IPR026899 -
Ssu1g2563 1892 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 4 511 - -
Ssu1g2563 1892 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 509 1891 - -
Ssu1g2563 1892 Pfam 1,3-beta-glucan synthase component 1014 1100 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
Ssu1g2563 1892 Pfam 1,3-beta-glucan synthase component 1105 1708 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
Ssu1g2563 1892 Pfam Vta1 like 39 167 IPR039431 -
Ssu1g2563 1892 PANTHER GLUCAN SYNTHASE-LIKE PROTEIN 4 511 - -
Ssu1g2563 1892 PANTHER GLUCAN SYNTHASE-LIKE PROTEIN 509 1891 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2563 Ssu-Chr1 70221577 70236493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2563 5 1892 Glycosyltransferase AT1G05570 59.024 0.0 2345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2563 K11000 - gmx:100777245 3443.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2563 1 70221577 70236493 Ssu5g2861 5 74963066 74977464 PCT