Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2255 ATGGGCATGAAAAGATACTCAACGCATAGCAATGATCCATTTTTTGAAGCTCACCACAACACAACAAGACAACACCAATGCACACAACCAAATAATCATGTTGTCCTAGAACACACATGTGCACAACAAAACCATTCTCCAAAATTGGCTGCTTCCACTTCCCAAAATGCTCCACCTGTGCTGCCTGCTTTTGTTGCCTTGCTGCTCCTTGTTACTTCAATTACCCCGGCAACATTGTGCCACCCCCTGCAGGGTAACCACACTCTTAGGCCAGGTCATGAGTTGCTCAAGCTGAGGAGAGTCAGAGCTCACTTGAAGAAGATCAACAAGCCTGCTGTCAAGACAATTCAGGCATGTAACATGTTCCATGACAGTGACACtAGTCCAGATGGTGATTTGATAGATTGTGTTTTATCTCACCAACAGCCGGCTTTTGACCATCCTGAGCTTAGGGGGCAGACACCATTGGATCCACCAGAGAGGCCAAAGGGAAACCACACTAATGGTGAAACTGAAAGGGTAACTGAGAGCTTTCAGCTGTGGAGTGATTCTGGTGAAGCATGCCCAGAAGGAACTGTTCCAATCAGAAGAACAACGGAGGAGGATATTCTTAGAGCAAGTTCTATCCGAAGATTTGGAAGAAAACCAAGACCTGTACGGAGAGACTCAACTGGCAGTGCTCATGAGCATGCAGTTGTTTTTGTAAATGGAGATCAATACTACGGAGCAAAGGCAGGCATAAACGTGTGGGCACCCCGTGTAACCGATGAATTTGAATTCAGCTTGTCACAGATGTGGGTCATTGCTGGCTCCTTTGGTAAAGATCTGAACACCATAGAAGCTGGTTGGCAGGTAAGTCCAGAACTGTATGGAGACAACTATCCAAGGTTCTTCACTTATTGGACTACTGATGCATATCACACAACTGGATGCTACAACTTACTCTGTTCAGGCTTTATCCAAACtaacaatagaatagcaataGGTGCAGCAATCTCCCCAAGATCCGCATACAACAGTAGACAGTTTGATATTGGCTTGATGGTTTGGAAGgATCCAAAGCGCGGACACTGGTGGCTGGAGTTTGGGTCAGGACTACTAGTTGGGTACTGGCCAGCAAACATGTTCAGCCACTTGAGGAGTCATGCGAGCATGGTACAATTTGGAGGAGAAATTGTGAACACTCGTTCAAGGGGTTACCACACTGGCACTCAAATGGGGAGTGGCCATTTTGCGGAAGAAGGGTTTAGAAAAGCAGCATATTTTAGAAACTTACAAGTCGTTGATTGGGACAATAACTTGCTTCCTCTTAGAAATATTCACCGTTTGGCTGACCATTCAAATTGCTATAACATAAGGCAGGGGACCAACAATGCTTGGGGAACTTACTTTTATTATGGAGGTCCTGGGAGGAACGTGAGATGCCCATGA 1431 0.4521 MGMKRYSTHSNDPFFEAHHNTTRQHQCTQPNNHVVLEHTCAQQNHSPKLAASTSQNAPPVLPAFVALLLLVTSITPATLCHPLQGNHTLRPGHELLKLRRVRAHLKKINKPAVKTIQACNMFHDSDTSPDGDLIDCVLSHQQPAFDHPELRGQTPLDPPERPKGNHTNGETERVTESFQLWSDSGEACPEGTVPIRRTTEEDILRASSIRRFGRKPRPVRRDSTGSAHEHAVVFVNGDQYYGAKAGINVWAPRVTDEFEFSLSQMWVIAGSFGKDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYHTTGCYNLLCSGFIQTNNRIAIGAAISPRSAYNSRQFDIGLMVWKDPKRGHWWLEFGSGLLVGYWPANMFSHLRSHASMVQFGGEIVNTRSRGYHTGTQMGSGHFAEEGFRKAAYFRNLQVVDWDNNLLPLRNIHRLADHSNCYNIRQGTNNAWGTYFYYGGPGRNVRCP 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2255 476 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 40 476 - -
Ssu1g2255 476 MobiDBLite consensus disorder prediction 145 172 - -
Ssu1g2255 476 Pfam Neprosin activation peptide 127 233 IPR025521 -
Ssu1g2255 476 Pfam Neprosin 259 469 IPR004314 -
Ssu1g2255 476 Gene3D - 251 362 - -
Ssu1g2255 476 PANTHER CARBOXYL-TERMINAL PEPTIDASE 40 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2255 Ssu-Chr1 63960696 63965375 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2255 - - gmx:100777828 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2255 1 63960696 63965375 Ssu6g1404 6 22998717 23001904 ECH
Ssu1g2255 1 63960696 63965375 Ssu1g2255 1 63960696 63965375 ECH
Ssu6g1404 6 22998717 23001904 Ssu1g2255 1 63960696 63965375 PCT