Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1795 ATGCGTATTATCTGTTTAACCATCTCAAGTTCAATGTTCTTGTTCACAAGTATGAGGAAAATGGCTCGTGTAATGGGGACCGGCGATGGTGCAGAAGTGATCCCAGTTGGCAAGGAGGGATCTTCTGAGAAGCCTGGATATATGGTTGTTGGGTTTGAGGTGATTCCTTGCAGTATTATGCATAATGCTGATTCTGTGAAAAACTTGAAGATGTATGACAAGTATCCGTCGTCTGTCCAATGTGATCCGGCCACTGTGGCAATGCCGATCAAAGAGGGTCAGCCTGTTGTTTTCACTTATGAGGTCACCTTTGAGGAGAGTGACATCAAGTGGCCATCTAGATGGGATGCCTACTTAAAGATGGAGGGAGCTAAAGTGCATTGGTTCTCTATCCTTAATTCGGTTATGGTGATCACTTTTCTTGCTGGTATTGTTCTTGTGATCTTCCTGAGGACTGTTAGGAGGGATCTGACCCGTTATGAGGAGCTTGATAAGGAGGCTCAAGCACAGATGAATGAAGAGTTATCTGGTTGGAAGCTTGTAGTGGGAGATGTTTTCCGCGCTCCATCAAATCCTGCTTTGTTGTGTGTGATGGTTGGGGATGGGGTTCAGATTCTAGGGATGTCTGTTGTGACGATATTGTTTGCTGCACTTGGATTCATGTCACCAGCATCTCGTGGAACACTGATCACAGGTATGCTGTTTTTCTATATGATACTTGGTATTGCTGCTGGTTATGTCTCAGTTCGGATGTGGAGGACAATTGGCTTTGGCAATCAGAAGGGCTGGGTTTCAATCGCGTGGAAAGCTGCGTGTTTCTTCCCAGGCATTTCCTTTTTGATCCTCACAACCTTGAACTTCCTATTGTGGGGAAGCCACAGCACCGGAGCCATTCCATTTTCACTCTTTGTAATACTAATCTTGCTTTGGTTCTGCATATCTGTACCCCTTACCCTTGTTGGTGGGTACTTTGGAGCTAAGGCACCTCACATTGAGTATCCAGTTCGAACCAACCAAATTCCTCGCGAAATTCCCCAGCAGAGGTACCCATCATGGCTGTTGGTTCTGGGTGCTGGCACCCTTCCATTTGGCACCTTGTTCATTGAGCTCTTCTTTATCATGTCCAGCATATGGATGGGTCGCGTTTACTATGTCTTTGGGTTTCTCTTCGTTGTTTTGATCCTTCTTGTGGTGGTTTGTGCTGAGGTATCTTTGGTTCTGACTTACATGCACCTGTGTGTGGAGGATTGGAAATGGTGGTGGAAATCTTTCTTTGCCTCCGGTTCTGTTGCCATATACATCTTTTTGTACTCCATAAACTATCTTGTGTTTGATCTCAAGAGTTTGAGTGGTCCCATGTCTGCAACTCTTTACTTGGGATACTCACTCTTCATGGTTCTAGCAGTCATGCTTTCTACAGGTACAATTGGGTTCCTCTCTTCATTCTGGTTCGTGTATTACTTGTTCTCTTCAGTCAAGTTGGATTGA 1488 0.4503 MRIICLTISSSMFLFTSMRKMARVMGTGDGAEVIPVGKEGSSEKPGYMVVGFEVIPCSIMHNADSVKNLKMYDKYPSSVQCDPATVAMPIKEGQPVVFTYEVTFEESDIKWPSRWDAYLKMEGAKVHWFSILNSVMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPSNPALLCVMVGDGVQILGMSVVTILFAALGFMSPASRGTLITGMLFFYMILGIAAGYVSVRMWRTIGFGNQKGWVSIAWKAACFFPGISFLILTTLNFLLWGSHSTGAIPFSLFVILILLWFCISVPLTLVGGYFGAKAPHIEYPVRTNQIPREIPQQRYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLFVVLILLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLKSLSGPMSATLYLGYSLFMVLAVMLSTGTIGFLSSFWFVYYLFSSVKLD 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1795 495 Coils Coil 150 170 - -
Ssu1g1795 495 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 35 495 IPR004240 GO:0016021
Ssu1g1795 495 Pfam Endomembrane protein 70 43 448 IPR004240 GO:0016021
Ssu1g1795 495 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 35 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1795 Ssu-Chr1 44864287 44865774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1795 15 495 Miscellaneous Gene Families AT5G35160 86.486 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1795 K17086 - gmx:100819368 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0915 6 14814243 14816210 Ssu1g1795 1 44864287 44865774 PCT