Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1554 ATGGCAACATCCACCAAGTTTGATATATCTTCCAGCAGTCCAGATAGACCATTGTACACCGGGCAGCGTGGATCCCACATAGCTCCTTCATTAGATAGATCATCTAGCTTTTGTGAAAGCATGGAAAATCCAATTCTGTCTTCTCTTCCAAGCATGTCAAGAAGCAGTTCTTCAGCAACACAAGGGGATGTGGTGAGCTTCTTCAATTGTGTGCGTTTTAATCCAAAGTTGATGGCTACAGAGCATAAGTCTAATCGTCAAACAGATTATAAACGACTTGTCAGTGCTGCTTTTGGAATTTCTCCCGATGAATCTCCATCTAGTTCTGCCAAAGGCAAGCAACTATTATCCCCAGTACCAGAAGATATCAAACGACTCGGAGAGAGTTTACATGCAAATTTTAGGAGGGCAAGGGACCGTGCTAAAATGTTTAGTGAAGCCTTGTCTAGATTCAATAAAGATTTCCAAAATATAACTTCAAAGAAGAGGTCTCGAGCTGAAACTTTTTCTAATGAACGTTCTAGTTTCATGTTAAGTGATCGATCAGTTTTGGGAACAAGCATAGGTAAGGTTGGAGTTCAAGGTCATGCAGTCACAGGAGGTTTTGAACATGACCAGCCGAAGTTGGAAGAAAGAACCAAAAATGTTCCAAACAAGCGCACTAGAACTTCTTTGGTTGATGTAAGGATGGATATACGGACTAATTCTCATGTCAGGCCATCTGGGACTGTAGATAGAGACAAAGAAATGTTACGGATCGCCAATAGTGGTGCAATTCATGGTGAGGAACGAACTTTACCCATTGGCGGTGATGGGTGGGAAAAGtcaaaaatgaagaagaagcgTTCTGGCATCAAACCAGATGGGTCTCCAAATACAGCATTGACAAAACCTGTTAACCTTTTCCAGGAAACTAAACACGGAATGCAACAAAGACTAGCCATTGATGGTCGATCAAAATTGAGTAATGATTCTCATTCTTTCAGGTCGGGGGTTTCTAATGGAACTGTTGGAGCTGGAAAATCAGATGGTGTCTCTCAACAAACAGGGTTGGGCATACGTGTCTCTACCGCAAGAAGTGACCTAGAAAATAACTCTTCTGTCAATGATAGGCGGGATCGTCCTGTTAATTCAGACaaggaaaagataaatttcaGAGCTGTTAACAAGGCAACTGTTCGTGATGAATTTAATTCAGCAAGCCCTAATTCAAGTGCAAAAATGAATACATCTATTCGGGCGCCACGATCTGGTTCAGGAGTTGCCCCGaagttgacaccaggtgtccaTAGAGCAGCTGTTCCTAATGATTGGGAGCCTTCTCATTGTATGACTAAGCCCCCTGCCAGTGTTGGCACTAACAATCGCAAGCGTGTGGCATCGGCACAATCATCTTCCCCTCCTGTTGTCCACTGGCAGAGACCACAAAAGAGCTCCCGTACTGCTAGAAGAACAAATTTTGTGCCCATTGTCTCAAGTAATGATGATTCCTCTGCTTTGGATTCTGTATCTGATGTGACTGGTAATGATATTGGGTTGGGATTTGTCAGACGTTTGGCTGGCAATTCTCCTcagcaaattaaattaaaaggtgATTCTTTAACTCCAGCTGCCTTATCTGAAAGTGAAGAGTCAGGGGTGGCTGAGATTAAACCAAAAGAGAAGGGCAGGAAACCAGAGGAGATAGATCAGAAAGTTGGACAAAATGTTCAAAAGGTTTCTAACATGGCCCTtccaacaagaaaaaataagctTGTCTCTGGGGAAGAACATGGAGATGGTGTTCGAAGGCAAGGTAGGACAGGACGCAATTTTCCTGCTGCAAGGTCGCAGATGCCAATGACATCTGCGAAGCTTGGAAATATAGGGACTGTAAAGCAACTTAGAAGTTCAAGAGTAGGATTTGAGAAGAGTGAAAGCAGGGCAGGTCGTCCACCAACCAGGAAACTTTCTGATCGTAAGGCATATGCACGTCAAAGACATACAACAATTAGTGCATCATCAGATTTTCTTGTTGGATCAGAAAATGGACATGAAGAATTATTGGCTGCTGTAAAGGGTGTTATCAACTCTGCTCATGCTTTTTCCAGCCAATTCTGGAGGCAGATGGAGCCTTTCTTCGGTTTGATAATTGAGGAGAATATTGCTTACTGGAAACAAAAGATAAATCTTGAATCAAGTGGGTTGACACCGACTCCAGTTCCTTCATATATAGATGATTGTGAAGCTGTTGCTAATGGGTTTGGGTTAACTAGCTGTGAAAGAGATTTTGAACCTGTTGATCAAATGGGTGCTGGAATTGTAGCAGAACAGTTACAGCTAGCTAAAGGAGATTCTAATGGAATTCCCCTCTGTCAAAGGCTAATATCTGCTTTATTTTCAGAGGAGTGTAGCAGCGAAAGTGAAGATATCAAGTTTGATGCATATGATACTGAATCTGAGGCAGATGGAGAGTTGGCTTTGAGCAGTTTGGATCACCACTCTCGATCTAATTCTCATCTTGCTTGTCATTCTGCTTACAACGGTTATAGGATAACTAGGAAGTCAGGACATGATGAGATTGAAAGTGATATAGTTGATATCCCATCAACTGGGTTAAATTCAAGCCTGAACATGCCTACCTTGACCTGTTCAGAGTTGCAATATGACGCCTTGAGTATGAATGAAAAGCTTCTCTTGGAGCTTCAAAGTATTGGAATTGCCCCAGAATCGGTGccTGAAATGTCTCAATCAGATGATGAAGAAATTTGTGAGGATATCACTAGGTTAGAGGAGCATTACCAAGGACAGATGTCCAAGAGGAAATGCTTGCTAGAAGGATTATTGAAATCTGCTTCAGTGACAAAGGAACTTCAAGAGAAGGATTTTGAACAACGTGCTCTTGACAAACTCGTTGTGATGGCTTATGAGAAATACATGGCTTGTTGGGGTCCTAGCCCATCAGGTGGAAAAAATGCAAGCAACAAAATGGCTAAGCAAGCTGCTTTGGGATTTGTTAAACGAACATTGGAACGATGCCATCAATTTGAAGATACAGGCAAGAGCTGCTTCAATGAGCCTTTGTATAAGGATATCTTCCTTTCTGCTTCCTCCCAGCTAAGTATTGTTCGGCAATTAGATGGCATGGAGGCTGAATCCTCAAAACCTTAcgcttcttccttttctctggAAGCAAGAACTGCAGATTCCATGGGTTCACAGCAGAACCCTTCACAATTAAGTCAGAATATGAGTAATCATGATCTCAATTCATCAGATATTCTTCCTGCTATAAATAGTTCATCTGAACAAACTAGTGGGAAGGAAGATCTATGGTCAAACAGGGTGAAGAAAAGGGAATTGTCCCTTGATGATGTTGGCGGTACCATTGGTAGTTCAAGTGCTCCATCAGGCATTGGAAGTTCTCTATCAAATAGTACAAAAGGAAAGAGGAGTGAGAGAGACAGAGATGGGAAAGGGCAGAGCAGAGAAGTGCTGTCCAGAAATGGAACTACAAAAGTTGGTAGGCCAGCATTATCTAGTGCTAAGGGAGAAAGGAAACCCAAAACAAAGCCTAAGCAGAAAGCAACTAAGCATTCTGTTTCTGTAAATGGCCTCCTTGGCAAGCTATCAGAGCAACCTAAAACAGCTTTGCCTTCTGTTTCAAAGTCTAACGAAATGTCTACTAACAACACTGCTAAGGAGAAAGATGAGTTTGGCATGGGTGAATTTGATGACCATGAGCCTATTGATTTGTCCAACCTGCAACTACCTGGAATGGATGTGCTTGGTGTTCCTGATGATCTTGGTGACCAAGGTCAGGATATTGGTTCATGGTTGAATATTGATGACGATGGATTGCAAGATGATGACTTTATGGGCCTTGAAATTCCCATGGATGACCTTTCAGACTTGAATATGATGGTTTGA 3909 0.4101 MATSTKFDISSSSPDRPLYTGQRGSHIAPSLDRSSSFCESMENPILSSLPSMSRSSSSATQGDVVSFFNCVRFNPKLMATEHKSNRQTDYKRLVSAAFGISPDESPSSSAKGKQLLSPVPEDIKRLGESLHANFRRARDRAKMFSEALSRFNKDFQNITSKKRSRAETFSNERSSFMLSDRSVLGTSIGKVGVQGHAVTGGFEHDQPKLEERTKNVPNKRTRTSLVDVRMDIRTNSHVRPSGTVDRDKEMLRIANSGAIHGEERTLPIGGDGWEKSKMKKKRSGIKPDGSPNTALTKPVNLFQETKHGMQQRLAIDGRSKLSNDSHSFRSGVSNGTVGAGKSDGVSQQTGLGIRVSTARSDLENNSSVNDRRDRPVNSDKEKINFRAVNKATVRDEFNSASPNSSAKMNTSIRAPRSGSGVAPKLTPGVHRAAVPNDWEPSHCMTKPPASVGTNNRKRVASAQSSSPPVVHWQRPQKSSRTARRTNFVPIVSSNDDSSALDSVSDVTGNDIGLGFVRRLAGNSPQQIKLKGDSLTPAALSESEESGVAEIKPKEKGRKPEEIDQKVGQNVQKVSNMALPTRKNKLVSGEEHGDGVRRQGRTGRNFPAARSQMPMTSAKLGNIGTVKQLRSSRVGFEKSESRAGRPPTRKLSDRKAYARQRHTTISASSDFLVGSENGHEELLAAVKGVINSAHAFSSQFWRQMEPFFGLIIEENIAYWKQKINLESSGLTPTPVPSYIDDCEAVANGFGLTSCERDFEPVDQMGAGIVAEQLQLAKGDSNGIPLCQRLISALFSEECSSESEDIKFDAYDTESEADGELALSSLDHHSRSNSHLACHSAYNGYRITRKSGHDEIESDIVDIPSTGLNSSLNMPTLTCSELQYDALSMNEKLLLELQSIGIAPESVPEMSQSDDEEICEDITRLEEHYQGQMSKRKCLLEGLLKSASVTKELQEKDFEQRALDKLVVMAYEKYMACWGPSPSGGKNASNKMAKQAALGFVKRTLERCHQFEDTGKSCFNEPLYKDIFLSASSQLSIVRQLDGMEAESSKPYASSFSLEARTADSMGSQQNPSQLSQNMSNHDLNSSDILPAINSSSEQTSGKEDLWSNRVKKRELSLDDVGGTIGSSSAPSGIGSSLSNSTKGKRSERDRDGKGQSREVLSRNGTTKVGRPALSSAKGERKPKTKPKQKATKHSVSVNGLLGKLSEQPKTALPSVSKSNEMSTNNTAKEKDEFGMGEFDDHEPIDLSNLQLPGMDVLGVPDDLGDQGQDIGSWLNIDDDGLQDDDFMGLEIPMDDLSDLNMMV 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 531 567 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 447 481 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 262 296 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 318 364 - -
Ssu1g1554 1302 PANTHER OS05G0107300 PROTEIN 1 1302 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 397 427 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 1059 1106 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 318 378 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 546 565 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 587 607 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 1120 1140 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 267 286 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 1 19 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 1118 1224 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 1059 1102 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 632 655 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 397 416 - -
Ssu1g1554 1302 PANTHER PLANT/F27B13-30 PROTEIN 1 1302 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 1190 1222 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 631 655 - -
Ssu1g1554 1302 MobiDBLite consensus disorder prediction 1141 1156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1554 Ssu-Chr1 36815608 36830064 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1554 - - gmx:100812435 2201.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1554 1 36815608 36830064 Ssu1g1554 1 36815608 36830064 ECH
Ssu6g0629 6 9786777 9796341 Ssu1g1554 1 36815608 36830064 PCT