Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1546 ATGGCGATCTCGGATGTGCCTGAAAGCGTAGGCACCGCCACCGCCGCCCTTCAGAGCGACTCAGATCTCAGACGGCCTTCTCTTCGCCGCAGGTCCAGCGCGGTCAGAGATTCCAGCTCCGACGACTCCTTGAACGACAAGAGCGGCGAGGAGAATAAAGACGTCGCGGACCAAGAACCAGTCGCCGGTGTCAAATATGCTTACCGTCCCTCCGTTCCTGCTCACTGCAGAATCAAGGAGAGCCCGCTCAGCTCTGACAACATTTTCAGACAGAGTCATGCAGGACTGTTCAATCTCTGTATAGTAGTGCTTGTTGCGGTGAACAGCAGACTTATCATCGAGAATTTAATGAAGTATGGTTGGTTGATTAAGTATGGCTTTTGGTTTAGTTCAAAGTCGTTGAGAGATTGGCCCCTCTTCATGTGTTGTCTCAGTCTTAACATATTTCCACTTGCTGCCTTTTTAGTGGAAAGGTTGGCACAACAAAAGTGTATTTCTGAACCAGTTGTTGTTCTACTTCATCTAATCGTCACGACTGTTGAATTCTCCTATCCAGTTTTAGTAATACTCAGGTGCGATTCTGCTTTTTTATCCAGTGTCACGTTGATGCTATTTACTTGTATTGTGTGGTTAAAATTGGTGTCATATGCACATACGAACTATGATATGAGAGCACTTACTGTTTCACGTGAAAAGGGAGAAACATTACCTGATACTTTGATTATGGAGTATCCGTACACTGTGACCTTCAAGAGTTTGGCATACTTCATGGTTGCTCCTACATTATGCTATCAGACAAGCTATCCTCGCACACCTTCTGTTCGAAAGGGTTGGGTGCTTCGTCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAACAATATATGAATCCTATTGTACAAAATTCACAACATCCTTTGAAGGGAAACCTTCTATATGCCATTGAGAGAATTCTGAAGCTTTCTGTTCCAAATGTATACGTGTGGCTCTGCATGTTCTACTGCTTTTTCCACCTTTGGTTAAATATACTTGCAGAACTTCTTCGATTTGGTGATCGTGAGTTCTATAAGGATTGGTGGAATGCCAAAACTGTTGAAGAGTATTGGAGGATGTGGAATATGCCTGTGCACAAATGGATGGTTCGCCACATATATTTTCCATGCATAAGGAATGGTATACCCAAGGGTGCTTCTGCATTAATTGCCTTCCTGGTTTCTGCTGTGTTTCATGAGTTCTGCATTGCCGTTCCTTGCCACGTGTTCAAGTTGTGGGCTTTTATAGGAATTATGTTTCAGGTTCCTTTGGTCTTGATCACTAATTACCtgcaaaataaatacagaaaCTCAATGGTTGGAAATATGATTTTTTGGTTCATATTTTGTATTCTTGGTCAACCTATGTGCGTACTATTATACTACCATGACTTGAtgaatagaaaaggagaagttgACTAA 1470 0.4143 MAISDVPESVGTATAALQSDSDLRRPSLRRRSSAVRDSSSDDSLNDKSGEENKDVADQEPVAGVKYAYRPSVPAHCRIKESPLSSDNIFRQSHAGLFNLCIVVLVAVNSRLIIENLMKYGWLIKYGFWFSSKSLRDWPLFMCCLSLNIFPLAAFLVERLAQQKCISEPVVVLLHLIVTTVEFSYPVLVILRCDSAFLSSVTLMLFTCIVWLKLVSYAHTNYDMRALTVSREKGETLPDTLIMEYPYTVTFKSLAYFMVAPTLCYQTSYPRTPSVRKGWVLRQLVKLIIFTGVMGFIIEQYMNPIVQNSQHPLKGNLLYAIERILKLSVPNVYVWLCMFYCFFHLWLNILAELLRFGDREFYKDWWNAKTVEEYWRMWNMPVHKWMVRHIYFPCIRNGIPKGASALIAFLVSAVFHEFCIAVPCHVFKLWAFIGIMFQVPLVLITNYLQNKYRNSMVGNMIFWFIFCILGQPMCVLLYYHDLMNRKGEVD 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1546 489 MobiDBLite consensus disorder prediction 1 56 - -
Ssu1g1546 489 Pfam MBOAT, membrane-bound O-acyltransferase family 156 476 IPR004299 -
Ssu1g1546 489 PANTHER DIACYLGLYCEROL O-ACYLTRANSFERASE 1C 20 489 - -
Ssu1g1546 489 PANTHER STEROL O-ACYLTRANSFERASE 20 489 IPR014371 GO:0008374
Ssu1g1546 489 PIRSF Oat_dag 8 489 IPR027251 GO:0004144|GO:0019432
Ssu1g1546 489 PIRSF Oat_ACAT_DAG_ARE 8 489 IPR014371 GO:0008374
Ssu1g1546 489 MobiDBLite consensus disorder prediction 23 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1546 Ssu-Chr1 36704810 36715582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1546 62 488 Lipid Metabolism Gene Families AT2G19450 76.581 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1546 K11155 - gmx:547982 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1546 1 36704810 36715582 Ssu1g1546 1 36704810 36715582 ECH
Ssu6g0638 6 9913544 9920833 Ssu1g1546 1 36704810 36715582 PCT