Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1503 ATGTGGTTTTCCTTCTGGAGATCCAGAGATCGTTTTTCCTTGGATCAACTCAGGTACTTAACTGATCAATTGACTAAAGTTCAAATAGTTAATGAGGTTAATAAGGATTTTGTTATTGAGGCACTGAGATCCATTGCGGAGTTGATAACATATGGTGACCAACATGACCCAAGCTTTTTTGAATTCTTCATGGAAAAGCAAGTTGTGGGAGAGTTTGTACGTGTTCTTAAACTTAGCAGAACCGCTAGCATTCCACTTCAGTTGCTACAAACAGTGAGCATTATGATCCAGAACCTAAGAAGTGAACATGCTATATACTATATGTTTAGTAATGAACATATGAACTACCTAATTACATATACATTTGACTTTCGCAACGAAGAGCTATTGTCATACTACATATCCTTTTTAAGAGCAATAAGTGGAAAATTGAACAAGAATACAATTTCTCTCCTTGTGAAGACTCACAATGATGAAGTAGTTTCATTTCCACTGTATGTTGAGGCAATACGCTTTGCCTTTCATGAGGAGAACATGGTTCGCACCGCTGTACGTACTGTGACCCTTAATGTTTATCATGTTGGGGATGAATGTGTTAATAGATATATAACCAGCGCACCTCAAACCGATTACTTCTCAAACCTGGTTTCATTTTTTAGGAATCAATGTATGGATTTAAATAGACTGGTCTCTGAGACATGGAAAAATCCAGGCCCAGATTCAACCTCTGCAATTATTGCTGCTGTAGATGAAATTGAGGATAACCTGTATTACTTTAGCGACGTTATCTCTGCTGGAATTCCTGATGTTGGCAGGCTAATAACAGACAGCATTCTGATGCTTCTGATTTTTCCAATACTTCTTCCTTCCCTGAGAGTAGTGGATGTTAATGACATGCAAAGTGGTGTTGTCACTTCTCTCTACTTACTTTGTTGCATCTTAAGGATAGTCAAGATCAAAGATTTGGCAAATACCATAGTCGCTGCTCTTTTTTATCCCTTAGAGtcctttacaaaattttctatgGGTAAAGTGAATGGCTATATATCTGATCATGGATTTATATCCGTAAGCCAAGAACCAGATGATGATAATATTGCCAAGTGCAAGGCAGAATGCTTGGCGGTGAATGTGCCACCCTCTTCTAGTTCTTCAGGTTTTCACCCAGAAAGTGTTATGTCAGAAGATAATTGTAGCAGTTCAAATTTGGCTTTAAGGGAGGTTTTGCTTGCATATGTTACTAAAGGGAATGATGTACAAGTTTTGGGTTCTCTGAGTGTGCTTGCCACTCTACTGCAAACTAAAGAACTTGATGAATCGATGCTAGATAGGCTTGGAATTCTTCCACAACGCAAACAGCACAAGAAACAGTTATTGCAAGCTTTGGTTGGCGAGGCTTCAGGTGAAGAGCAACTTTTTTCTTCTGAAAATAGCTTGATGAGGGATGGCAGTGGCTGTGAGCTCGATGTCTATCTTGAAAAGATCAAGGAGCAGTATGGGATGTCTTTTCTGTCTTCTGATTTTGTAACAAGCCCTCGTGTGCCTAGATTTCAGGTGCTTGATGCGTTAGTGAGCCTCTTTTGCCGTTCTAATATATCTGCAGAGACACTCTGGGATGGTGGTTGGCTTTTACGCCAGTTGCTTCCTTACAGTGAAGCAGAATTCAACAGTCATCACCTGGAATTGCTGAAAGTTTCATACAAGAATTCTGCTAACGCTCTTGTAAAGGAGGTTCGAGGTTTCTGGCCTGATCTTCTTATTACTGTTCTTTGTAATGAGTGGAGAAAATGCAAAAGAGCAATGGAGTCGTCATACCCTCCAAAAGAACCAAAGTGCATACTTTTCCCATCTCAGTTGTTCTCTTCAGAAGAAGATATACCTGAGGGCTCATCATTTGCTGCTGGAGAAAGAATGCATGAATTGGTGAAGGTATTTGTAGTTCTGCACCAACTTCAAATATTCACTCTAGGTAGACCTTTGCCTGAGCAACCTCTTATTTATCCTCCTGGTGATCTCCTAGTGAATTCTCGTGCCCAGACTTCTGGACTTGATGTGTCAGGCCCAAAACCAGGAATTGAACTCAGCCTTGTTAATGCTGTGCCTTGTAGAATTGCTTTCGAAAGGGGCAAAGAGCGTCATTTTTGCTTTCTAGCAATCTCTGTAGGAACATCTGGGTGGCTTGTGTTGGCAGAAGAATTGCCACTGAAGAAACCCTATGGAGTTGTTCGGGTTGCTGCACCTTTGGCTGGGTGCAATCCCAGGATTGACGATAAACATCCAAGATGGTTACATCTGCGGATCCGACCTTCTTCTTTACCTGTTCTGGATCCTGCCAAGTTCAATGCTCATGAGAAATTAAAGACAAAAGCTTTTGTTGATGGGAGATGGACATTGGCGTTCAGGGATGAGGAGTCTTGCAAGTCTGCTTTATCCATGATTCTTGAAGAGATTGATTTTCTGAGTGACGAGGTTCACAGAAGACTAAAACCTTTGCTCAACTTTGAAACCGCATTGGATTTATCAGGCCTGTCTATATGTGTTCCAGAGGAGGATTCCTCTTCACATACAACACCTCCCAATTCGGTGTAA 2589 0.4067 MWFSFWRSRDRFSLDQLRYLTDQLTKVQIVNEVNKDFVIEALRSIAELITYGDQHDPSFFEFFMEKQVVGEFVRVLKLSRTASIPLQLLQTVSIMIQNLRSEHAIYYMFSNEHMNYLITYTFDFRNEELLSYYISFLRAISGKLNKNTISLLVKTHNDEVVSFPLYVEAIRFAFHEENMVRTAVRTVTLNVYHVGDECVNRYITSAPQTDYFSNLVSFFRNQCMDLNRLVSETWKNPGPDSTSAIIAAVDEIEDNLYYFSDVISAGIPDVGRLITDSILMLLIFPILLPSLRVVDVNDMQSGVVTSLYLLCCILRIVKIKDLANTIVAALFYPLESFTKFSMGKVNGYISDHGFISVSQEPDDDNIAKCKAECLAVNVPPSSSSSGFHPESVMSEDNCSSSNLALREVLLAYVTKGNDVQVLGSLSVLATLLQTKELDESMLDRLGILPQRKQHKKQLLQALVGEASGEEQLFSSENSLMRDGSGCELDVYLEKIKEQYGMSFLSSDFVTSPRVPRFQVLDALVSLFCRSNISAETLWDGGWLLRQLLPYSEAEFNSHHLELLKVSYKNSANALVKEVRGFWPDLLITVLCNEWRKCKRAMESSYPPKEPKCILFPSQLFSSEEDIPEGSSFAAGERMHELVKVFVVLHQLQIFTLGRPLPEQPLIYPPGDLLVNSRAQTSGLDVSGPKPGIELSLVNAVPCRIAFERGKERHFCFLAISVGTSGWLVLAEELPLKKPYGVVRVAAPLAGCNPRIDDKHPRWLHLRIRPSSLPVLDPAKFNAHEKLKTKAFVDGRWTLAFRDEESCKSALSMILEEIDFLSDEVHRRLKPLLNFETALDLSGLSICVPEEDSSSHTTPPNSV 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1503 862 Pfam Uncharacterised conserved protein 42 192 IPR019155 -
Ssu1g1503 862 PANTHER UNCHARACTERIZED 1 842 IPR039272 -
Ssu1g1503 862 PANTHER PROTEIN TRANSPARENT TESTA 9 1 842 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1503 Ssu-Chr1 35246525 35261473 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1503 K19513 - gmx:100786267 1560.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1503 1 35246525 35261473 Ssu1g1503 1 35246525 35261473 ECH
Ssu6g0686 6 10728899 10738978 Ssu1g1503 1 35246525 35261473 PCT